| Literature DB >> 34292414 |
Amandine Crombé1,2, Jean-Christophe Lecomte1,3,4, Nathan Banaste1,5, Karim Tazarourte6,7, Mylène Seux1, Hubert Nivet1,3,4, Vivien Thomson1,8, Guillaume Gorincour9,10.
Abstract
BACKGROUND: COVID-19 pandemic highlighted the need for real-time monitoring of diseases evolution to rapidly adapt restrictive measures. This prospective multicentric study aimed at investigating radiological markers of COVID-19-related emergency activity as global estimators of pandemic evolution in France. We incorporated two sources of data from March to November 2020: an open-source epidemiological dataset, collecting daily hospitalisations, intensive care unit admissions, hospital deaths and discharges, and a teleradiology dataset corresponding to the weekly number of CT-scans performed in 65 emergency centres and interpreted remotely. CT-scans specifically requested for COVID-19 suspicion were monitored. Teleradiological and epidemiological time series were aligned. Their relationships were estimated through a cross-correlation function, and their extremes and breakpoints were compared. Dynamic linear models were trained to forecast the weekly hospitalisations based on teleradiological activity predictors.Entities:
Keywords: Coronavirus infections; Forecasting; Public health; Teleradiology
Year: 2021 PMID: 34292414 PMCID: PMC8295630 DOI: 10.1186/s13244-021-01040-3
Source DB: PubMed Journal: Insights Imaging ISSN: 1869-4101
Fig. 1Study flow chart. Abbreviation: ICU: intensive care units. The data from the French public health agency (Santé Publique France) can be found at https://www.data.gouv.fr/fr/datasets/donnees-hospitalieres-relatives-a-lepidemie-de-covid-19/)
Characteristics of the teleradiological cohort per region
| Regions | No. of CT-scans in COVID-19 workflowa | No. of partner emergency centresb |
|---|---|---|
| Auvergne-Rhône-Alpes | 8241/46,049 (17.9) | 29/65 (44.6) |
| Bourgogne Franche Comté | 3808/14,639 (26) | 5/65 (7.7) |
| Bretagne | 541/4 659 (11.6) | 6/65 (9.2) |
| Grand Est | 726/3744 (19.4) | 3/65 (4.6) |
| Hauts de France | 657/3460 (19) | 2/65 (3.1) |
| Ile de France | 361/2184 (16.5) | 3/65 (4.6) |
| Nouvelle Aquitaine | 1815/9973 (18.2) | 9/65 (13.8) |
| Occitanie | 1434/8206 (17.5) | 6/65 (9.2) |
| Provence-Alpes-Côte d'Azur | 1550/7194 (21.5) | 5/65 (7.7) |
No. number
aData are number of CT-scans performed in the dedicated COVID-19 workflow divided by the total number of CT-scans performed during the same study period (from 2020–03-23 to 2020–11-29) in the partner emergency centres from this region
bIn total, 65 metropolitan partner emergency centres were included in the study on November 2020
Fig. 2French weekly temporal evolution of: (a) new COVID-19-related hospitalisations, (b) new COVID-19-related intensive care unit (ICU) admissions, (c) new COVID-19-related hospital deaths, (d) CT-scans performed in the COVID-19 emergency teleradiological workflow and (e) percentage of activity of the COVID-19 workflow (i.e. number of CT-scans related to COVID-19 over the total number of CT-scans). The dashed lines correspond to the dates of 1st and 2nd lockdown beginnings (2020-03-14 and 2020-10-30). The dotted lines correspond to the dates of post-lockdown phases (2020-05-11, 2020-06-02 and 2020-06-22). Note: Source of A, B, C curves is epidemiological dataset (SPF); source of D and E curves is teleradiological dataset
Fig. 3Correlations between the weekly emergency teleradiological time-series and the weekly number of hospitalisations time series. (a) Superimposition of the number of hospitalisations with the number of CT-scans performed in the COVID-19 workflow and (b) corresponding cross-correlation plot. (c) Superimposition of the number of hospitalisations with the percentage of COVID-19-related activity, and (d) corresponding cross-correlation plot. A spike above or below the blue lines on the cross-correlation plots indicates a significant correlation of the two time series for the given lag
Significant consecutive cross-correlations between the weekly emergency teleradiological time series and the weekly number of hospitalisations time series
| Lag with no. of hospitalisations | No. of CT-scans performed in the COVID-19 workflow | Percentage of activity of the COVID-19 workflow |
|---|---|---|
| 5 weeks before | – | 0.37 |
| 4 weeks before | 0.42 | 0.46 |
| 3 weeks before | 0.57 | 0.57 |
| 2 weeks before | 0.72 | 0.7 |
| 1 week before | 0.86 | 0.82 |
| Same week | ||
| 1 week after | 0.84 | 0.78 |
| 2 weeks after | 0.69 | 0.55 |
| 3 weeks after | 0.42 | – |
Data in bold correspond to maximum values
no. number
Extrema of the emergency teleradiological time series and the epidemiological time series, during the first wave, inter-wave and second wave, with corresponding dates
| Time series | First wave | Inter-waves | Second wave | |||
|---|---|---|---|---|---|---|
| Maximum | Week of maximum | Minimum | Week of minimum | Maximum | Week of maximum | |
| No. of hospitalisations | 23,542 | 2020-03-30 | 431 | 2020-07-13 | 19 735 | 2020-11-02 |
| No. of ICU hospitalisations | 4445 | 2020-03-30 | 50 | 2020-29-06 | 2 994 | 2020-11-02 |
| No. of deaths at hospital | 3436 | 2020-04-06 | 58 | 2020-08-03 | 2 875 | 2020-11-09 |
| No. of CT-scans in the COVID-19 workflow | 1086 | 2020-03-23 | 148 | 2020-29-06 | 1 202 | 2020-11-02 |
| Percentage of activity of COVID-19 workflow | 53.1% | 2020-03-23 | 5.5% | 2020-29-06 | 35.8% | 2020-11-02 |
| No. of CT-scans compatible with COVID-19 | – | – | 24 | 2020-08-17 | 793 | 2020-11-02 |
| Percentage of compatible CT-scans in COVID-19 workflow | – | – | 12.4% | 2020-08-10 | 74.4% | 2020-11-09 |
| Percentage of compatible CT-scans over all CT-scans | – | – | 0.8% | 2020-08-10 | 23.6% | 2020-11-09 |
Lines 1–3: epidemiological data from the French public health agency (Santé Publique France)
Lines 4–8: teleradiological data
No. number, ICU intensive care unit
Fig. 4Assessment of breakpoints after the first wave on the following weekly time series: (a) no. of hospitalisations, (b) no. of CT-scans performed in the COVID-19 workflow by teleradiologists during on-call duty, (c) percentage of compatible CT-scans in the COVID-19 workflow. On each plot, the solid vertical lines correspond to the significant breakpoints. The dotted lines correspond to the significant breakpoints for the other time series. (d–f) illustrates the lagged difference (X(t) – X(t − 1)) for the three series, respectively, highlighting a spike between the weeks of 2020-08-24 and 2020-09-14
Final predictive models
| Model | Equation | MAPE in train set | Ljung–Box Test | MAPE in test set |
|---|---|---|---|---|
| CT( | with | 6.82 | 0.0490* | 20.02 |
| CT( | with | 25.82 | 0.0387* | 20.72 |
| CT( | with | 30.85 | 0.2406 | 127.13 |
| CT( | with | 24.40 | 0.1182 | 5.09 |
The ‘model’ column gives the predictors entered in the algorithm to predict the number of hospitalisations for the week ‘t’. Hence, ‘t − 1’ and ‘t − 2’ are one and two weeks before (i.e. lag − 1 and lag − 2)
The terms in bold correspond to the regression part of the model, and the other terms to the error η(t) which can be expressed with an auto-regressive integrated moving average (ARIMA) model with ε(t) an uncorrelated error term (i.e. white noise) following a normal law N with variance in parentheses
CT(x), where x in {t, t − 1, t − 2}, corresponds to the number of CT-scans performed in the COVID-19 teleradiological emergency workflow during the week ‘x’
H(x′), where x′ in {t − 1, t − 2}, corresponds to the number of patients hospitalised in mainland French hospitals during the week ‘x′’
Ld(t) is a binary variable that takes the value 1 if France is under national lockdown and 0 otherwise
ARIMA auto-regressive integrative moving average, MAPE mean absolute percentage error
*p < 0.05
Fig. 5Predictions of the best model (a) and the models based on the number of CT-scans performed the same week (CT(t)), one week before (CT(t − 1)) and two weeks before (CT(t − 2)) in the COVID-19 workflow (b). The dotted lines correspond to the beginning and the end of the 1st national lockdown and the beginning of the 2nd national lockdown, respectively. Abbreviations: 95%CI: 95% confidence interval, no.: number
Fig. 6Regional correlations between the teleradiological emergency time-series and number of hospitalisations. French regions with colour-encoding according to the percentage of teleradiological emergency activity in the COVID-19 workflow (a) and the number of hospitalisations (b) from 2020-03-23 to 2020-11-30. Superimposition of the two time series over the study period in (c) the Hauts-de-France (HDF) and Grand-Est (GE) regions; (d) the Nouvelle Aquitaine (NA) region; (e) Auvergne-Rhône-Alpes (ARA) region and (f) the Provence-Alpes-Côte d’Azur region