| Literature DB >> 34290581 |
Long-Biao Cui1,2, Ya-Juan Zhang3, Hong-Liang Lu3, Lin Liu4,5, Hai-Jun Zhang6, Yu-Fei Fu7, Xu-Sha Wu7, Yong-Qiang Xu7, Xiao-Sa Li8, Yu-Ting Qiao8, Wei Qin4, Hong Yin7, Feng Cao1.
Abstract
BACKGROUND: Emerging evidence suggests structural and functional disruptions of the thalamus in schizophrenia, but whether thalamus abnormalities are able to be used for disease identification and prediction of early treatment response in schizophrenia remains to be determined. This study aims at developing and validating a method of disease identification and prediction of treatment response by multi-dimensional thalamic features derived from magnetic resonance imaging in schizophrenia patients using radiomics approaches.Entities:
Keywords: diagnosis; machine learning; radiomics; schizophrenia; thalamus; treatment
Year: 2021 PMID: 34290581 PMCID: PMC8289251 DOI: 10.3389/fnins.2021.682777
Source DB: PubMed Journal: Front Neurosci ISSN: 1662-453X Impact factor: 4.677
Clinical and demographical data.
| Age (years) | 25 ± 7 | 29 ± 9 | <0.001 | 24 ± 6 | 27 ± 8 | 0.036 |
| Gender (M/F) | 107/84 | 109/90 | 0.804 | 40/21 | 26/22 | 0.226 |
| Education level (years) | 12 ± 3 | 14 ± 4 | <0.001 | 12 ± 2 | 13 ± 3 | 0.579 |
| Duration of illness (months) | 19 ± 26 | – | – | 17 ± 21 | 21 ± 31 | 0.368 |
| Total score | 90 ± 17 | – | – | 90 ± 20 | 89 ± 14 | 0.774 |
| Positive score | 23 ± 6 | – | – | 23 ± 7 | 23 ± 7 | 0.847 |
| Negative score | 21 ± 8 | – | – | 21 ± 8 | 22 ± 8 | 0.548 |
| General score | 46 ± 9 | – | – | 46 ± 10 | 45 ± 7 | 0.329 |
| Total score | – | – | – | 60 ± 15 | 80 ± 12 | <0.001 |
| Positive score | – | – | – | 14 ± 5 | 20 ± 5 | <0.001 |
| Negative score | – | – | – | 14 ± 6 | 20 ± 7 | <0.001 |
| General score | – | – | – | 32 ± 8 | 40 ± 6 | <0.001 |
| Changes in PANSS score (%) | – | – | – | 51 ± 16 | 16 ± 11 | <0.001 |
| Stay in hospital (days) | – | – | – | 17 ± 5 | 15 ± 5 | 0.115 |
| Antipsychotic dose (mg/day)a | – | – | – | 10 ± 4 | 10 ± 4 | 0.388 |
Scanning parameters of T1-weighted imaging.
| Scanner | Siemens | GE |
| TR (ms) | 2530 | 8.2 |
| TE (ms) | 3.5 | 3.2 |
| Flip angle (°) | 7 | 12 |
| FOV (mm2) | 256 × 256 | 256 × 256 |
| Matrix | 256 × 256 | 256 × 256 |
| Slice thickness (mm) | 1 | 1 |
| Section gap (mm) | 0 | 0 |
| Number of slices | 192 | 196 |
FIGURE 1Workflow for analysis in classification of patients and healthy controls. In the upper panel, all of the participants were randomly divided into 10 groups, nine for training and one for testing. The lower panel summarizes radiomics steps. The radiomics features were extracted using CV-LASSO in the training group and validated in the testing group using random forest.
FIGURE 2Extraction of radiomics features. Four groups of radiomics features include first-order features, second-order features, texture features, and wavelet features. A total of 4019 features were extracted.
FIGURE 3Classification performance. In the upper panel, ROC analyses showed an AUC of 0.7155 for predicting early treatment response. In the lower panel, ROC analyses showed an AUC of 0.6413 for identifying patients with schizophrenia.
Classification performance.
| Diagnosis (191 patients and 199 controls) | 0.68 ± 0.04 | 0.60 ± 0.31 | 0.61 ± 0.30 | 0.64 ± 0.23 | “W1.Mid”; “W1.SRE_8”; “W2.LRHGLE_8”; “W3.Min”; “W4.Co_Corr_12”; “W4.Co_Var_13”; “W5.Co_Corr_11”; “W5.RLN_9”; “W6.Co_Corr_2”; “W6.Co_Corr_7”; “W7.IMC1_9”; “W9.Co_Corr_12” |
| Prediction (61 responders and 48 non-responders) | 0.75 ± 0.08 | 0.65 ± 0.25 | 0.80 ± 0.23 | 0.72 ± 0.12 | “W1.LRE_9”; “W3.Min”; “W6.Co_Corr_7”; “W6.Co_Var_7” |
Classification performance using intra- and inter-dataset cross-validation.
| Diagnosis (17 features) | 68.37% | 71.15% | 70.62% | W1.Mid; W1.Min; W1.Mid; W2.RMS; W2.Surface; W2.SVR; W2.Volume; W2.SRE_8; W2.Homo2_13; W3.Min; W4.Co_Corr_12; W4.Co_Var_13; W5.Co_Corr_11; W5.RLN_9; W6.Co_Corr_2; W6.Co_Corr_7; W7.IMC1_9 |
| Prediction (7 features) | 71.01% | 72.53% | 71.69% | W1.SRLGLE_1; W1.Compactness1; W2.Energy; W2.MAD; W3.Min; W6.Cluster_Shade_mean; W8.Cluster_Shade_8 |
| Diagnosis (12 features) | 65.19% | 63.21% | 68.55% | W1.Mid; W1.SRE_8; W1.Min; W2.RMS; W2.Surface; W2.Homo2_13; W3.Min; W4.Co_Corr_12; W5.Co_Corr_11; W5.RLN_9; W6.Co_Corr_2; W9.SRHGLE_5 |
| Prediction (5 features) | 68.36% | 65.75% | 69.73% | W1.LRE_9; W1.HGLRE_3; W2.Energy_GLCM_3; W7.Max_GLCM_1; W8.AutoCorr_2 |
| Diagnosis (10 features) | 63.88% | 67.56% | 66.46% | W1.LGLRE_11; W1.SRE_6; W2.Sum_var_mean; W2.SRLGLE_6; W4.Dissimilarity_1; W5.Dissimilarity_mean; W5.SRLGLE_4; W7.Diff_entropy_13; W7.Homo2_13; W9.IMC1_mean |
| Prediction (4 features) | 65.21% | 69.02% | 64.35% | W1.Min; W2.Uniformity; W8.Energy_GLCM_1; W9.LRHGLE_mean |