Literature DB >> 34289009

Can we have it all? Repurposing target capture for repeat genomics. A commentary on: 'Aiming off the target: recycling target capture sequencing reads for investigating repetitive DNA'.

Tony Heitkam1, Sònia Garcia2.   

Abstract

Entities:  

Keywords:  Target capture sequencing; phylogenomics; repetitive DNA

Mesh：

Substances：

Year:  2021        PMID： 34289009      PMCID： PMC8577196          DOI： 10.1093/aob/mcab080

Source DB:  PubMed          Journal:  Ann Bot        ISSN： 0305-7364            Impact factor:   5.040


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  8 in total

1.  Repetitive DNA in eukaryotic genomes.

Authors:  Maria Assunta Biscotti; Ettore Olmo; J S Pat Heslop-Harrison
Journal:  Chromosome Res       Date:  2015-09       Impact factor: 5.239

2.  A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering.

Authors:  Matthew G Johnson; Lisa Pokorny; Steven Dodsworth; Laura R Botigué; Robyn S Cowan; Alison Devault; Wolf L Eiserhardt; Niroshini Epitawalage; Félix Forest; Jan T Kim; James H Leebens-Mack; Ilia J Leitch; Olivier Maurin; Douglas E Soltis; Pamela S Soltis; Gane Ka-Shu Wong; William J Baker; Norman J Wickett
Journal:  Syst Biol       Date:  2019-07-01       Impact factor: 15.683

3.  Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin.

Authors:  André Marques; Tiago Ribeiro; Pavel Neumann; Jiří Macas; Petr Novák; Veit Schubert; Marco Pellino; Jörg Fuchs; Wei Ma; Markus Kuhlmann; Ronny Brandt; André L L Vanzela; Tomáš Beseda; Hana Šimková; Andrea Pedrosa-Harand; Andreas Houben
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-21       Impact factor: 11.205

4.  Reconstructing phylogenetic relationships based on repeat sequence similarities.

Authors:  Daniel Vitales; Sònia Garcia; Steven Dodsworth
Journal:  Mol Phylogenet Evol       Date:  2020-02-28       Impact factor: 4.286

5.  Adding color to a century-old enigma: multi-color chromosome identification unravels the autotriploid nature of saffron (Crocus sativus) as a hybrid of wild Crocus cartwrightianus cytotypes.

Authors:  Thomas Schmidt; Tony Heitkam; Susan Liedtke; Veit Schubert; Gerhard Menzel
Journal:  New Phytol       Date:  2019-03-01       Impact factor: 10.151

6.  Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

Authors:  Petr Novák; Pavel Neumann; Jirí Macas
Journal:  BMC Bioinformatics       Date:  2010-07-15       Impact factor: 3.169

7.  Comparative analysis of repetitive sequences among species from the potato and the tomato clades.

Authors:  Paola Gaiero; Magdalena Vaio; Sander A Peters; M Eric Schranz; Hans de Jong; Pablo R Speranza
Journal:  Ann Bot       Date:  2019-02-15       Impact factor: 4.357

8.  Summarizing and correcting the GC content bias in high-throughput sequencing.

Authors:  Yuval Benjamini; Terence P Speed
Journal:  Nucleic Acids Res       Date:  2012-02-09       Impact factor: 16.971
  8 in total
  1 in total

1.  Larix species range dynamics in Siberia since the Last Glacial captured from sedimentary ancient DNA.

Authors:  Luise Schulte; Stefano Meucci; Kathleen R Stoof-Leichsenring; Tony Heitkam; Nicola Schmidt; Barbara von Hippel; Andrei A Andreev; Bernhard Diekmann; Boris K Biskaborn; Bernd Wagner; Martin Melles; Lyudmila A Pestryakova; Inger G Alsos; Charlotte Clarke; Konstantin V Krutovsky; Ulrike Herzschuh
Journal:  Commun Biol       Date:  2022-06-09
  1 in total

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