Literature DB >> 34288935

PHOTONAI-A Python API for rapid machine learning model development.

Ramona Leenings1,2, Nils Ralf Winter1, Lucas Plagwitz1, Vincent Holstein1, Jan Ernsting1,2, Kelvin Sarink1, Lukas Fisch1, Jakob Steenweg1, Leon Kleine-Vennekate1, Julian Gebker1, Daniel Emden1, Dominik Grotegerd1, Nils Opel1, Benjamin Risse2, Xiaoyi Jiang2, Udo Dannlowski1, Tim Hahn1.   

Abstract

PHOTONAI is a high-level Python API designed to simplify and accelerate machine learning model development. It functions as a unifying framework allowing the user to easily access and combine algorithms from different toolboxes into custom algorithm sequences. It is especially designed to support the iterative model development process and automates the repetitive training, hyperparameter optimization and evaluation tasks. Importantly, the workflow ensures unbiased performance estimates while still allowing the user to fully customize the machine learning analysis. PHOTONAI extends existing solutions with a novel pipeline implementation supporting more complex data streams, feature combinations, and algorithm selection. Metrics and results can be conveniently visualized using the PHOTONAI Explorer and predictive models are shareable in a standardized format for further external validation or application. A growing add-on ecosystem allows researchers to offer data modality specific algorithms to the community and enhance machine learning in the areas of the life sciences. Its practical utility is demonstrated on an exemplary medical machine learning problem, achieving a state-of-the-art solution in few lines of code. Source code is publicly available on Github, while examples and documentation can be found at www.photon-ai.com.

Entities:  

Year:  2021        PMID: 34288935     DOI: 10.1371/journal.pone.0254062

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  3 in total

1.  Machine learning for neuroimaging with scikit-learn.

Authors:  Alexandre Abraham; Fabian Pedregosa; Michael Eickenberg; Philippe Gervais; Andreas Mueller; Jean Kossaifi; Alexandre Gramfort; Bertrand Thirion; Gaël Varoquaux
Journal:  Front Neuroinform       Date:  2014-02-21       Impact factor: 4.081

2.  Machine learning can predict survival of patients with heart failure from serum creatinine and ejection fraction alone.

Authors:  Davide Chicco; Giuseppe Jurman
Journal:  BMC Med Inform Decis Mak       Date:  2020-02-03       Impact factor: 2.796

3.  Survival analysis of heart failure patients: A case study.

Authors:  Tanvir Ahmad; Assia Munir; Sajjad Haider Bhatti; Muhammad Aftab; Muhammad Ali Raza
Journal:  PLoS One       Date:  2017-07-20       Impact factor: 3.240

  3 in total

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