Literature DB >> 34286015

RNA Purification from the Unicellular Green Alga, Chromochloris zofingiensis.

Sean D Gallaher1, Melissa S Roth2.   

Abstract

Chromochloris zofingiensis is a unicellular green alga that is an emerging model species for studies in fields such as biofuel production, ketocarotenoid biosynthesis and metabolism. The recent availability of a high-quality genome assembly facilitates systems-level analysis, such as RNA-Seq. However, cells of this alga have a tough cell wall, which is a challenge for RNA purification. This protocol was designed specifically to breach the cell wall and isolate high-quality RNA suitable for RNA-Seq studies.
Copyright © 2018 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  Algae; Cell wall; Chromochloris zofingiensis; RNA purification; RNA-Seq

Year:  2018        PMID: 34286015      PMCID: PMC8276062          DOI: 10.21769/BioProtoc.2793

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  3 in total

1.  Chromosome-level genome assembly and transcriptome of the green alga Chromochloris zofingiensis illuminates astaxanthin production.

Authors:  Melissa S Roth; Shawn J Cokus; Sean D Gallaher; Andreas Walter; David Lopez; Erika Erickson; Benjamin Endelman; Daniel Westcott; Carolyn A Larabell; Sabeeha S Merchant; Matteo Pellegrini; Krishna K Niyogi
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-08       Impact factor: 11.205

2.  Simultaneous production of triacylglycerol and high-value carotenoids by the astaxanthin-producing oleaginous green microalga Chlorella zofingiensis.

Authors:  Jin Liu; Xuemei Mao; Wenguang Zhou; Michael T Guarnieri
Journal:  Bioresour Technol       Date:  2016-04-26       Impact factor: 9.642

3.  The impact of nitrogen starvation on the dynamics of triacylglycerol accumulation in nine microalgae strains.

Authors:  Guido Breuer; Packo P Lamers; Dirk E Martens; René B Draaisma; René H Wijffels
Journal:  Bioresour Technol       Date:  2012-08-10       Impact factor: 9.642

  3 in total

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