Literature DB >> 34282326

A Python-based programming language for high-performance computational genomics.

Ariya Shajii1, Ibrahim Numanagić1,2, Alexander T Leighton1,3, Haley Greenyer2, Saman Amarasinghe4, Bonnie Berger5,6.   

Abstract

Year:  2021        PMID： 34282326     DOI： 10.1038/s41587-021-00985-6

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  3 in total

1.  Sequre: a high-performance framework for rapid development of secure bioinformatics pipelines.

Authors:  Haris Smajlović; Ariya Shajii; Bonnie Berger; Hyunghoon Cho; Ibrahim Numanagić
Journal:  IEEE Int Symp Parallel Distrib Process Workshops Phd Forum       Date:  2022-08-01

2.  Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer.

Authors:  Barış Ekim; Bonnie Berger; Rayan Chikhi
Journal:  Cell Syst       Date:  2021-09-14       Impact factor: 10.304

3.  Fast characterization of segmental duplication structure in multiple genome assemblies.

Authors:  Hamza Išerić; Can Alkan; Faraz Hach; Ibrahim Numanagić
Journal:  Algorithms Mol Biol       Date:  2022-03-18       Impact factor: 1.405
  3 in total

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