| Literature DB >> 34278045 |
Patrick N Bisimwa1,2, Dieudonné S Wasso1, Fabrice Bantuzeko1, Chance B Aksanti1,3, Ronald Tonui2, Ahadi B Birindwa1, Espoir B Bisimwa1.
Abstract
Porcine Parvovirus (PPV) is one of the major pathogens responsible for reproductive failure in sows. However, the information on its frequency in the Democratic Republic of Congo (DRC) is largely unknown. Thus, the present study was carried out to detect and genetically characterize some of known Parvovirus namely porcine parvovirus 1, 2, 3, 4, porcine bocavirus (PBoV) 1, and porcine bocavirus-like virus (PBolikeV) in 80 randomly selected archive pig farm samples during an African swine fever (ASF) survey in South Kivu, eastern DRC by polymerase chain reaction (PCR). The majority of animals analyzed (82.5%) were local breeds, and most of them (87.5%) were adults (above one year old). The majority of the animals (65%) were from the free range farms. The PCR result indicated that only PPV3 was detected in 14/80 pigs. Seven swine herds (8.7%) were co-infected with PPV3 and ASFV. Morever, a significantly high PPV3 infection rate was observed in the spleen (66.7%, P<0.0001) compared to the others type of samples. Further, the phylogenetic analysis of partial PPV3 sequences revealed one clade of PPV3 clustered with PPV3 isolates reported in a previous study in Cameroun, China, Slovakia, Germany, and China. This study is the first to report the detection of PPV in DRC. Further studies are needed to assess the levels of PPV3 viremia and the impact in co-infections with other endemic pig viruses, including ASFV.Entities:
Keywords: DRC; Frequency; Genetic diversity; Pigs; Porcine Parvovirus; Reproductive failures
Year: 2021 PMID: 34278045 PMCID: PMC8264215 DOI: 10.1016/j.vas.2021.100187
Source DB: PubMed Journal: Vet Anim Sci ISSN: 2451-943X
Fig. 1Map of South Kivu province in the Democratic Republic of Congo highlighting the sampling sites and dots show the sampling points (Arc GIS, UEA).
PPVs' primer sequences previously reported and used for detection and molecular characterization.
| Primer name | Primer sequence | Amplicon size (bp) | Virus type | Region | Reference |
|---|---|---|---|---|---|
| CACAGAAGCAACAGCAATTAGG | 203 | PPV1 | ORF2 | ||
| CTAGCTCTTGTGAAGATGTGG | |||||
| ACACGATGAGCGGTACGA | 279 | PPV2 | ORF2 | ||
| TCCTCACGAGGTCTCTTCTG | |||||
| GCAGTCTGCGCTTAACTT | 392 | PPV3 | ORF2 | ||
| CTGCTTCATCCACTGGTC | |||||
| TCATAGCACTATGGCGAGC | 284 | PPV4 | ORF2 | ||
| AGC ATT CTG CGT TGG ACA | |||||
| GGGCGAGAACATTGAAGAGGT | 495 | PBo-likeV | ORF2 | ||
| TTGTGAGTATGGGTATTGGTG | |||||
| TGGTGGAACGTCTCTCTGACA | 466 | PBoV1/V2 | NS1/NP1 | ||
| GAGTCATTCGGTCTCCTCCAT |
PPV3 sequences obtained in this study and other PPV's sequences previously reported and used in phylogenetic analysis.
PPV3 nucleotide sequences generated from this study are highlighted.
Characteristics of pigs screened and husbandry practices in each study district.
| Variables | Characteristics | Fizin | Kabaren | Kalehen | Mwengan | Uviran | Walungun | Total N=80(%) |
|---|---|---|---|---|---|---|---|---|
| Breed | Local | 10 | 9 | 6 | 9 | 16 | 16 | 66(82.5) |
| Crossed | 0 | 3 | 5 | 0 | 0 | 6 | 14(17.5) | |
| Age | Adult | 9 | 10 | 9 | 8 | 15 | 19 | 70(87.5) |
| Young adult | 1 | 2 | 2 | 1 | 1 | 3 | 10(12.5) | |
| Husbandry system | Free-range | 9 | 5 | 3 | 1 | 16 | 9 | 43(53.8) |
| Housed | 1 | 7 | 8 | 8 | 0 | 13 | 37(46.2) | |
| Source of pig | Own farm | 5 | 7 | 6 | 8 | 12 | 14 | 52(65) |
| Bought/market | 3 | 3 | 3 | 0 | 1 | 6 | 16(20) | |
| NGOs | 2 | 2 | 2 | 1 | 3 | 2 | 12(15) | |
| Swill feeding | Yes | 1 | 4 | 3 | 3 | 6 | 8 | 25(31.3) |
| No | 9 | 10 | 10 | 7 | 12 | 16 | 64(80) | |
| Administration of vitamins | Yes | 0 | 0 | 2 | 1 | 2 | 2 | 7(8.7) |
| No | 10 | 12 | 9 | 8 | 14 | 20 | 73(91.3) | |
| Sharing pen | Yes | 6 | 10 | 7 | 7 | 10 | 14 | 54(67.5) |
| Non | 4 | 2 | 4 | 2 | 6 | 8 | 26(32.5) |
Fig. 2PCR amplification of the PPV3. A 1.5% agarose gel showing the bands obtained with the diagnostic primers targeting the ORF2 of PPV3. Lane M: 1Kb plus (Thermo Fisher Scientific) Molecular weight DNA marker; Lanes 2, 3, 4, and 6 are PPV3 positive samples with an approximately 400 bp band size. Lane 1, 5, and 7 are PPV3 negative samples, while lane 8 is a negative control.
Proportion and distribution of porcine parvoviruses type 3 genomes and co-infections with ASFV in domestic pigs from South Kivu province, East of DR Congo.
| Districts | Number animal | PPV3 positive | Positive (%) | Co-infection with ASFV n (%) |
|---|---|---|---|---|
| Fizi | 10 | 2 | 20 | 0 (0) |
| Kabare | 12 | 1 | 8.3 | 0 (0) |
| Kalehe | 11 | 1 | 9 | 1 (9) |
| Mwenga | 9 | 1 | 11.1 | 0 (0) |
| Uvira | 16 | 2 | 12.5 | 3(18.7) |
| Walungu | 22 | 7 | 31.8 | 3 (13.6) |
Linear regression analysis of PPV3 in the tested pigs according to the breeding system, sample type, and geographical region.
| Variable | Category(n) | Positive n (%) | Coefficient | Std Error | F-test | P-value |
|---|---|---|---|---|---|---|
| Age | Adult (70) | 10 (14.3) | 0.472 | |||
| Young adult (10) | 3 (30) | 0.080 | 0.111 | 0.522 | ||
| Breed | Exotic (14) | 1 (7.1) | 0.269 | |||
| Local (66) | 12 (18.9) | 0.117 | 0.105 | 1.238 | ||
| Husbandry system | Free-range (43) | 7 (16.3) | ||||
| Housed (37) | 6 (16.2) | 0.093 | 0.093 | 0.989 | 0.323 | |
| Districts | Fizi (10) | 2 (20) | ||||
| Kabare (12) | 1 (8.3) | -0.165 | 0.148 | 1.2430 | 0.268874 | |
| Kalehe (11) | 1 (9) | -0.122 | 0.165 | 0.550 | 0.460 | |
| Mwenga (9) | 1 (11.1) | -0.225 | 0.167 | 1.801 | 0.184 | |
| Uvira (16) | 2 (12.5) | -0.249 | 0.141 | 3.112 | 0.082 | |
| Walungu (22) | 7 (31.8) | -0.111 | 0.143 | 0.600 | 0.441 | |
| Sample type | Blood (59) | 3 (5.08) | ||||
| Liver (5) | 2 (40) | 0.381 | 0.160 | 5.694 | 0.019* | |
| Spleen (12) | 8 (66.7) | 0.621 | 0.110 | 31.878 | <0.0001*** | |
| CONSTANT | 0.019 | 0.144 | 0.016 | 0.898 |
Fig. 3Phylogenetic tree from the alignment of VP2 gene of the seven types of PPVs. The evolutionary history was inferred using the Maximum Likelihood (ML) method based on the Kimura 2-parameter model. This tree included 23 porcine parvoviruses' sequences grouped from PPV type 1 to type 7. The phylogeny was inferred following 1,000 bootstrap replications, and the node values show percentage bootstrap support. Scale bar indicates nucleotide substitutions per site. The GenBank accession numbers for the different PPVs sequences are indicated in parenthesis. Sequences from this study are presented by a red circle (•).