| Literature DB >> 34278022 |
Catherine Mooney1,2,3, Daragh O'Boyle3,4, Mikael Finder5,6, Boubou Hallberg5,6, Brian H Walsh3,4,7, David C Henshall2, Geraldine B Boylan3,4, Deirdre M Murray3,4.
Abstract
Hypoxic Ischemic Encephalopathy (HIE) remains a major cause of neurological disability. Early intervention with therapeutic hypothermia improves outcome, but prediction of HIE is difficult and no single clinical marker is reliable. Machine learning algorithms may allow identification of patterns in clinical data to improve prognostic power. Here we examine the use of a Random Forest machine learning algorithm and five-fold cross-validation to predict the occurrence of HIE in a prospective cohort of infants with perinatal asphyxia. Infants with perinatal asphyxia were recruited at birth and neonatal course was followed for the development of HIE. Clinical variables were recorded for each infant including maternal demographics, delivery details and infant's condition at birth. We found that the strongest predictors of HIE were the infant's condition at birth (as expressed by Apgar score), need for resuscitation, and the first postnatal measures of pH, lactate, and base deficit. Random Forest models combining features including Apgar score, most intensive resuscitation, maternal age and infant birth weight both with and without biochemical markers of pH, lactate, and base deficit resulted in a sensitivity of 56-100% and a specificity of 78-99%. This study presents a dynamic method of rapid classification that has the potential to be easily adapted and implemented in a clinical setting, with and without the availability of blood gas analysis. Our results demonstrate that applying machine learning algorithms to readily available clinical data may support clinicians in the early and accurate identification of infants who will develop HIE. We anticipate our models to be a starting point for the development of a more sophisticated clinical decision support system to help identify which infants will benefit from early therapeutic hypothermia.Entities:
Keywords: Acidosis; Clinical risk prediction; Hypoxic ischaemic encephalopathy; Machine learning; Neonatal encephalopathy; Perinatal asphyxia
Year: 2021 PMID: 34278022 PMCID: PMC8261660 DOI: 10.1016/j.heliyon.2021.e07411
Source DB: PubMed Journal: Heliyon ISSN: 2405-8440
Figure 1The pattern of “missingness” (NA) between HIE and PA infants for each feature. Pink stripes indicate a different missingness, and grey stripes indicate equal missingness.
Figure 2The pattern of “missingness” (NA) between HIE and PA infants for each feature in the Model 2 data after the removal of 175 infants that were missing pH, lactate and base deficit. Pink stripes indicate a different missingness, and grey stripes indicate equal missingness.
Figure 3Principal component analysis (a) after removal of biochemical markers of pH, lactate and base deficit and lowest cord pH followed by imputations of missing values (Model 1) and (b) after removal of infants with missing pH, lactate and base deficit (Model 2). PA: perinatal asphyxia without encephalopathy, HIE: hypoxic ischaemic encephalopathy.
Table showing the number of infants in each category in the training, validation and independent test sets for Model 1 (biochemical markers of pH, lactate, base deficit and lowest cord pH removed) and Model 2 (infants with missing pH, lactate and base deficit removed). PA = perinatal asphyxia without encephalopathy, HIE = hypoxic ischaemic encephalopathy (all grades), Mild = mild HIE, Mod = moderate HIE, Severe = severe HIE.
| Model 1 | Model 2 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PA | HIE | Mild | Mod | Severe | PA | HIE | Mild | Mod | Severe | |
| Training | 141 | 61 | 30 | 22 | 9 | 57 | 59 | 32 | 20 | 7 |
| Validation | 59 | 26 | 14 | 9 | 3 | 22 | 26 | 15 | 10 | 1 |
| Independent | 80 | 42 | 24 | 13 | 5 | 36 | 34 | 18 | 11 | 5 |
| Total | 280 | 129 | 68 | 44 | 17 | 115 | 119 | 65 | 41 | 13 |
Interactions recovered by iRF with stability score > 0.5. Model 1 (biochemical markers of pH, lactate and base deficit and lowest cord pH removed) and Model 2 (infants with missing pH, lactate and base deficit removed).
| Model 1 | Model 2 | ||
|---|---|---|---|
| 1-min Apgar + 10-min Apgar | 1 | 5-min Apgar + 10-min Apgar | 1 |
| 5-min Apgar + 10-min Apgar | 1 | 10-min Apgar + Initial base deficit | 1 |
| 1-min Apgar + 5-min Apgar | 0.97 | 5-min Apgar + Initial base deficit | 0.97 |
| Duration of membrane rupture, h + 10-min Apgar | 0.90 | 10-min Apgar + Lowest cord pH | 0.80 |
| Birthweight, g + 1-min Apgar | 0.90 | 1-min Apgar + Initial base deficit | 0.77 |
| Socio-economic group + 10-min Apgar | 0.87 | Umbilical cord pH + Initial base deficit | 0.73 |
| Birthweight, g + 10-min Apgar | 0.87 | 1-min Apgar + 10-min Apgar | 0.70 |
| Socio-economic group + 5-min Apgar | 0.83 | 10-min Apgar + Umbilical cord pH | 0.70 |
| Socio-economic group + 1-min Apgar | 0.80 | 10-min Apgar + Initial lactate | 0.67 |
| Duration of membrane rupture, h + 1-min Apgar | 0.80 | Maternal age + Initial base deficit | 0.67 |
| Duration of stage 2 + 10-min Apgar | 0.73 | 5-min Apgar + Lowest cord pH | 0.60 |
| Duration of membrane rupture, h + 5-min Apgar | 0.70 | 5-min Apgar + Umbilical cord pH | 0.60 |
| 10-min Apgar + Head circumference | 0.70 | 5-min Apgar + Initial lactate | 0.57 |
| Birthweight, g + 5-min Apgar | 0.70 | Lowest cord pH + Initial base deficit | 0.57 |
| Maternal age + 1-min Apgar | 0.70 | Birthweight, g + Initial base deficit | 0.53 |
| Maternal age + 10-min Apgar | 0.70 | ||
| 1-min Apgar + Head circumference | 0.63 | ||
| Maternal age + 5-min Apgar | 0.63 | ||
| Duration of stage 2 + 1-min Apgar | 0.60 | ||
| 5-min Apgar + Head circumference | 0.57 | ||
| Time of birth, 24 h + 10-min Apgar | 0.53 | ||
Table showing the features selected for each model. Features were selected based on the iRF interactions (Table 2) and the variable importance plots (Figures S1 and S2). ⁎ identifies feature appearing in the variable importance plots only and ⁎⁎ identifies feature selected based on the iRF interactions only.
| Model 1 | Model 2 |
|---|---|
| Apgar Score 1 | Apgar Score 1 |
| Apgar Score 5 | Apgar Score 5 |
| Apgar Score 10 | Apgar Score 10 |
| Most Intensive Resuscitation⁎ | Most Intensive Resuscitation⁎ |
| Maternal Age | Maternal Age |
| Birth Weight | Birth Weight |
| Time of Birth⁎⁎ | First Postnatal Base Deficit |
| Assisted Ventilation at 10 mins⁎ | First Postnatal Lactate |
| Head Circumference⁎⁎ | First Postnatal pH |
| Duration of Second Stage | Lowest Cord pH |
| Duration Membrane Rupture | |
| Socioeconomic Group |
Table showing the evaluation of Model 1 (no biochemical markers) on the independent test set. PA = perinatal asphyxia without encephalopathy, HIE = hypoxic ischaemic encephalopathy, Mild = mild HIE, Mod = moderate HIE, Severe = severe HIE, FPR = false positive rate, MCC = Matthews correlation coefficient.
| PA vs HIE (all grades) | PA vs Mild/Mod | PA vs Mod/Severe | PA/Mild vs Mod/Severe | |
|---|---|---|---|---|
| Accuracy | 0.83 | 0.80 | 0.94 | 0.91 |
| Specificity | 0.89 | 0.88 | 0.99 | 0.97 |
| Sensitivity | 0.71 | 0.65 | 0.72 | 0.56 |
| Precision | 0.77 | 0.71 | 0.93 | 0.77 |
| FPR | 0.11 | 0.13 | 0.01 | 0.03 |
| MCC | 0.61 | 0.54 | 0.79 | 0.61 |
Table showing the evaluation of Model 2 (including biochemical markers) on the independent test set. PA = perinatal asphyxia without encephalopathy, HIE = hypoxic ischaemic encephalopathy, Mild = mild HIE, Mod = moderate HIE, Severe = severe HIE, FPR = false positive rate, MCC = Matthews correlation coefficient.
| PA Vs HIE (all grades) | PA Vs Mild/Mod | PA Vs Mod/Severe | PA/Mild Vs Mod/Severe | |
|---|---|---|---|---|
| Accuracy | 0.81 | 0.82 | 0.94 | 0.86 |
| Specificity | 0.78 | 0.81 | 0.92 | 0.93 |
| Sensitivity | 0.85 | 0.83 | 1.00 | 0.63 |
| Precision | 0.78 | 0.77 | 0.84 | 0.71 |
| FPR | 0.22 | 0.19 | 0.08 | 0.07 |
| MCC | 0.63 | 0.63 | 0.88 | 0.58 |
Figure 4ROC plots (a) after removal of biochemical markers of pH, lactate and base deficit and lowest cord pH followed by imputations of missing values (Model 1) and (b) after removal of infants with missing pH, lactate and base deficit (Model 2). PA: perinatal asphyxia without encephalopathy, HIE: hypoxic ischaemic encephalopathy.