Literature DB >> 34274981

Evolution of Superoxide Dismutases and Catalases in Cyanobacteria: Occurrence of the Antioxidant Enzyme Genes before the Rise of Atmospheric Oxygen.

Mariko Harada1, Ayumi Akiyama2, Ryutaro Furukawa3, Shin-Ichi Yokobori4, Eiichi Tajika2, Akihiko Yamagishi4.   

Abstract

Knowledge on the evolution of antioxidant systems in cyanobacteria is crucial for elucidating the cause and consequence of the rise of atmospheric oxygen in the Earth's history. In this study, to elucidate the origin and evolution of cyanobacterial antioxidant enzymes, we analyzed the occurrence of genes encoding four types of superoxide dismutases and three types of catalases in 85 complete cyanobacterial genomes, followed by phylogenetic analyses. We found that Fe superoxide dismutase (FeSOD), Mn superoxide dismutase (MnSOD), and Mn catalase (MnCat) are widely distributed among modern cyanobacteria, whereas CuZn superoxide dismutase (CuZnSOD), bifunctional catalase (KatG), and monofunctional catalase (KatE) are less common. Ni superoxide dismutase (NiSOD) is distributed among marine Prochlorococcus and Synechococcus species. Phylogenetic analyses suggested that bacterial MnSOD evolved from cambialistic Fe/MnSOD before the diversification of major bacterial lineages. The analyses suggested that FeSOD evolved from MnSOD before the origin of cyanobacteria. MnCat also evolved in the early stages of bacterial evolution, predating the emergence of cyanobacteria. KatG, KatE, and NiSOD appeared 2.3-2.5 billion years ago. Thus, almost all cyanobacterial antioxidant enzymes emerged before or during the rise of atmospheric oxygen. The loss and appearance of these enzymes in marine cyanobacteria may be also related to the change in the metal concentration induced by the increased oxygen concentration in the ocean.
© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Catalase; Cyanobacteria; Phylogenetic analysis; Superoxide dismutase

Year:  2021        PMID: 34274981     DOI: 10.1007/s00239-021-10021-5

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  28 in total

1.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

Authors:  Kazutaka Katoh; Kazuharu Misawa; Kei-ichi Kuma; Takashi Miyata
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

2.  Timing of morphological and ecological innovations in the cyanobacteria--a key to understanding the rise in atmospheric oxygen.

Authors:  C E Blank; P Sánchez-Baracaldo
Journal:  Geobiology       Date:  2009-10-23       Impact factor: 4.407

Review 3.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

4.  Quest for Ancestors of Eukaryal Cells Based on Phylogenetic Analyses of Aminoacyl-tRNA Synthetases.

Authors:  Ryutaro Furukawa; Mizuho Nakagawa; Takuya Kuroyanagi; Shin-Ichi Yokobori; Akihiko Yamagishi
Journal:  J Mol Evol       Date:  2016-11-26       Impact factor: 2.395

5.  ProtTest 3: fast selection of best-fit models of protein evolution.

Authors:  Diego Darriba; Guillermo L Taboada; Ramón Doallo; David Posada
Journal:  Bioinformatics       Date:  2011-02-17       Impact factor: 6.937

6.  Diversity, function and evolution of genes coding for putative Ni-containing superoxide dismutases.

Authors:  C L Dupont; K Neupane; J Shearer; B Palenik
Journal:  Environ Microbiol       Date:  2008-04-10       Impact factor: 5.491

Review 7.  Occurrence, phylogeny, structure, and function of catalases and peroxidases in cyanobacteria.

Authors:  Margit Bernroitner; Marcel Zamocky; Paul G Furtmüller; Günter A Peschek; Christian Obinger
Journal:  J Exp Bot       Date:  2009-01-06       Impact factor: 6.992

8.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

9.  trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.

Authors:  Salvador Capella-Gutiérrez; José M Silla-Martínez; Toni Gabaldón
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

10.  Sonic Hedgehog Controls the Phenotypic Fate and Therapeutic Efficacy of Grafted Neural Precursor Cells in a Model of Nigrostriatal Neurodegeneration.

Authors:  Lalitha Madhavan; Brian F Daley; Beverly L Davidson; Ryan L Boudreau; Jack W Lipton; Allyson Cole-Strauss; Kathy Steece-Collier; Timothy J Collier
Journal:  PLoS One       Date:  2015-09-04       Impact factor: 3.240

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  1 in total

1.  Distribution and diversity of ROS-generating enzymes across the animal kingdom, with a focus on sponges (Porifera).

Authors:  Olivia H Hewitt; Sandie M Degnan
Journal:  BMC Biol       Date:  2022-09-30       Impact factor: 7.364

  1 in total

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