Literature DB >> 34274370

Removing striping artifacts in light-sheet fluorescence microscopy: a review.

Pietro Ricci1, Vladislav Gavryusev1, Caroline Müllenbroich2, Lapo Turrini1, Giuseppe de Vito3, Ludovico Silvestri4, Giuseppe Sancataldo5, Francesco Saverio Pavone6.   

Abstract

In recent years, light-sheet fluorescence microscopy (LSFM) has found a broad application for imaging of diverse biological samples, ranging from sub-cellular structures to whole animals, both in-vivo and ex-vivo, owing to its many advantages relative to point-scanning methods. By providing the selective illumination of sample single planes, LSFM achieves an intrinsic optical sectioning and direct 2D image acquisition, with low out-of-focus fluorescence background, sample photo-damage and photo-bleaching. On the other hand, such an illumination scheme is prone to light absorption or scattering effects, which lead to uneven illumination and striping artifacts in the images, oriented along the light sheet propagation direction. Several methods have been developed to address this issue, ranging from fully optical solutions to entirely digital post-processing approaches. In this work, we present them, outlining their advantages, performance and limitations.
Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  3D microscopy; Brain imaging; Light-sheet microscopy; Striping

Mesh:

Year:  2021        PMID: 34274370     DOI: 10.1016/j.pbiomolbio.2021.07.003

Source DB:  PubMed          Journal:  Prog Biophys Mol Biol        ISSN: 0079-6107            Impact factor:   3.667


  8 in total

1.  Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy.

Authors:  Giuseppe de Vito; Lapo Turrini; Caroline Müllenbroich; Pietro Ricci; Giuseppe Sancataldo; Giacomo Mazzamuto; Natascia Tiso; Leonardo Sacconi; Duccio Fanelli; Ludovico Silvestri; Francesco Vanzi; Francesco Saverio Pavone
Journal:  Biomed Opt Express       Date:  2022-02-16       Impact factor: 3.732

2.  Elimination of stripe artifacts in light sheet fluorescence microscopy using an attention-based residual neural network.

Authors:  Zechen Wei; Xiangjun Wu; Wei Tong; Suhui Zhang; Xin Yang; Jie Tian; Hui Hui
Journal:  Biomed Opt Express       Date:  2022-02-07       Impact factor: 3.732

3.  Optimized U-Net model for 3D light-sheet image segmentation of zebrafish trunk vessels.

Authors:  Jingyi Yin; Guang Yang; Xiaofei Qin; Hui Li; Linbo Wang
Journal:  Biomed Opt Express       Date:  2022-04-21       Impact factor: 3.562

Review 4.  Practical considerations for quantitative light sheet fluorescence microscopy.

Authors:  Chad M Hobson; Min Guo; Harshad D Vishwasrao; Yicong Wu; Hari Shroff; Teng-Leong Chew
Journal:  Nat Methods       Date:  2022-10-20       Impact factor: 47.990

5.  Multimodal Characterization of Seizures in Zebrafish Larvae.

Authors:  Lapo Turrini; Michele Sorelli; Giuseppe de Vito; Caterina Credi; Natascia Tiso; Francesco Vanzi; Francesco Saverio Pavone
Journal:  Biomedicines       Date:  2022-04-20

Review 6.  Microscopic Imaging Methods for Organ-on-a-Chip Platforms.

Authors:  Bailey C Buchanan; Jeong-Yeol Yoon
Journal:  Micromachines (Basel)       Date:  2022-02-19       Impact factor: 2.891

7.  3D molecular phenotyping of cleared human brain tissues with light-sheet fluorescence microscopy.

Authors:  Luca Pesce; Marina Scardigli; Vladislav Gavryusev; Annunziatina Laurino; Giacomo Mazzamuto; Niamh Brady; Giuseppe Sancataldo; Ludovico Silvestri; Christophe Destrieux; Patrick R Hof; Irene Costantini; Francesco S Pavone
Journal:  Commun Biol       Date:  2022-05-12

8.  Light-sheet mesoscopy with the Mesolens provides fast sub-cellular resolution imaging throughout large tissue volumes.

Authors:  Eliana Battistella; Jan Schniete; Katrina Wesencraft; Juan F Quintana; Gail McConnell
Journal:  iScience       Date:  2022-07-21
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.