| Literature DB >> 34268356 |
Li-Ying Shi1, Yu-Shuai Han2, Jing Chen2, Zhi-Bin Li2, Ji-Cheng Li2, Ting-Ting Jiang3.
Abstract
BACKGROUND: Acute myocardial infarction (AMI) is the most serious type of heart disease. Clinically, there is an urgent need to discover diagnostic biomarkers for the early diagnosis of AMI.Entities:
Keywords: Acute myocardial infarction (AMI); biomarker; iTRAQ; protein
Year: 2021 PMID: 34268356 PMCID: PMC8246203 DOI: 10.21037/atm-20-7891
Source DB: PubMed Journal: Ann Transl Med ISSN: 2305-5839
Figure 1The workflow of the experiment. (A) The inclusion of subjects, collection of serum samples, protein pretreatment, and iTRAQ-2DLC-MS/MS analysis. (B) Screening and validation of differentially expressed proteins. AMI, acute myocardial infarction; SAP, stable angina pectoris; KEGG, Kyoto Encyclopedia of Genes and Genomes database; KCRM, creatine kinase M-type; AATC, aspartate aminotransferase; FINC, fibronectin; MDHC, malate dehydrogenase; APOE, apolipoprotein E; ELISA, enzyme linked immunosorbent assay.
Up-regulated proteins in AMI patients compared with SAP patients and healthy controls
| Protein ID | Protein name | Main function by GO analysis | iTRAQ ratio | |
|---|---|---|---|---|
| AMI cases/controls | AMI cases/SAP cases | |||
| P01591 | Immunoglobulin J chain | Antigen binding; immune response | 2.51 | 2.89 |
| P01624 | Ig kappa chain V-III region POM | Fc-gamma receptor signaling pathway involved in phagocytosis | 1.65 | 2.20 |
| P01717 | Ig lambda chain V-IV region Hil | Complement activation | 1.64 | 2.10 |
| P01767 | Ig heavy chain V-III region BUT | Receptor-mediated endocytosis | 2.00 | 2.30 |
| P01833 | Polymeric immunoglobulin receptor | Polymeric immunoglobulin receptor activity | 1.73 | 2.22 |
| P01834 | Ig kappa chain C region | Antigen binding | 1.82 | 2.32 |
| P01876 | Ig alpha-1 chain C region | Antibacterial humoral response; receptor-mediated endocytosis | 2.02 | 2.96 |
| P01877 | Ig alpha-2 chain C region | Receptor-mediated endocytosis | 2.36 | 2.49 |
| P01880 | Ig delta chain C region | Immune response | 3.22 | 1.65 |
| P02671 | Fibrinogen alpha chain | Induction of bacterial agglutination; positive regulation of vasoconstriction | 3.03 | 2.23 |
| P04075 | Fructose-bisphosphate aldolase A | ATP biosynthetic process; small molecule metabolic process | 2.01 | 1.77 |
| P04211 | Ig lambda chain V region 4A | Receptor-mediated endocytosis | 2.01 | 1.71 |
| P04433 | Ig kappa chain V-III region VG | Complement activation | 2.23 | 1.91 |
| P05413 | Fatty acid-binding protein | Fatty acid metabolic process | 2.18 | 2.47 |
| P06314 | Ig kappa chain V-IV region B17 | Complement activation; Fc-epsilon receptor signaling pathway | 1.61 | 1.77 |
| P06702 | Protein S100-A9 | Chemokine production; defense response to bacterium/fungus | 2.53 | 2.50 |
| P06732 | Creatine kinase M-type | Cellular nitrogen compound metabolic process | 23.92 | 22.11 |
| P07195 | L-lactate dehydrogenase B chain | Cellular carbohydrate metabolic process; NAD metabolic process | 1.82 | 2.85 |
| P08294 | Extracellular superoxide dismutase [Cu-Zn] | Response to hypoxia; response to reactive oxygen species | 2.43 | 1.78 |
| P0CG05 | Ig lambda-2 chain C regions | Complement activation; innate immune response | 2.74 | 2.54 |
| P14618 | Pyruvate kinase PKM | MHC class II protein complex binding; pathogenesis | 1.90 | 2.08 |
| P15259 | Phosphoglycerate mutase 2 | Gluconeogenesis; glucose metabolic process | 4.12 | 3.59 |
| P17174 | Aspartate aminotransferase | Glutamate catabolic process to 2-oxoglutarate; oxaloacetate metabolic process | 4.42 | 4.36 |
| P18136 | Ig kappa chain V-III region HIC | Complement activation; receptor-mediated endocytosis | 1.63 | 1.76 |
| P40925 | Malate dehydrogenase | NAD binding; regulation of mitochondrion degradation | 11.88 | 3.87 |
| P60174 | Triosephosphate isomerase | Glucose metabolic process | 1.71 | 1.67 |
| P62805 | Histone H4 | Negative regulation of gene expression | 2.62 | 1.77 |
| Q96JQ0 | Protocadherin-16 | Hippo signaling; neurogenesis | 4.36 | 1.73 |
| Q9UPU3 | VPS10 domain-containing receptor SorCS3 | Neuropeptide receptor activity | 39.57 | 3.08 |
AMI, acute myocardial infarction; SAP, stable angina pectoris; GO, Gene Ontology.
Down-regulated proteins in AMI patients compared with SAP patients and healthy controls
| Protein ID | Protein name | Main function by GO analysis | iTRAQ ratio | |
|---|---|---|---|---|
| AMI cases/controls | AMI cases/SAP cases | |||
| P02751 | Fibronectin | Acute-phase response; leukocyte migration; response to wounding | 0.23 | 0.17 |
| P02656 | Apolipoprotein C-III | Cholesterol metabolic process | 0.27 | 0.21 |
| P04003 | C4b-binding protein alpha chain | Complement activation; innate immune response | 0.49 | 0.26 |
| P06727 | Apolipoprotein A-IV | Cholesterol metabolic process | 0.47 | 0.25 |
| P19961 | Alpha-amylase 2B | Carbohydrate metabolic process | 0.16 | 0.27 |
| P35527 | Keratin | Skin development; spermatogenesis | 0.49 | 0.02 |
| P62328 | Thymosin beta-4 | Blood coagulation | 0.46 | 0.43 |
| P67936 | Tropomyosin alpha-4 chain | Muscle contraction; osteoblast differentiation | 0.27 | 0.11 |
| Q12923 | Tyrosine-protein phosphatase non-receptor type 13 | Protein dephosphorylation | 0.44 | 0.18 |
| Q71U36 | Tubulin alpha-1A chain | Cellular protein metabolic process | 0.33 | 0.31 |
AMI, acute myocardial infarction; SAP, stable angina pectoris; GO, Gene Ontology.
Figure 2Data mining of the differentially expressed proteins in AMI patients. (A) GO analysis. (B) KEGG pathway analysis. AMI, acute myocardial infarction; GO, Gene Ontology; KEGG, Kyoto Encyclopedia of Genes and Genomes database.
Figure 3ELISA validation of serum proteins. Serum levels of APOE (A), AATC (B), and FINC (C) in AMI patients (N=30), healthy controls (N=30), and SAP patients (N=30). P value <0.05 indicates statistical significance using the Mann-Whitney U test. *, P<0.05; **, P<0.01; ***, P<0.001. ELISA, enzyme linked immunosorbent assay; APOE, apolipoprotein E; AATC, aspartate aminotransferase; FINC, fibronectin; AMI, acute myocardial infarction; SAP, stable angina pectoris.
Clinical data analysis of AMI patients compared with SAP patients and healthy controls
| Variables | Healthy controls (n=30) | AMI patients (n=30) | SAP patients (n=30) | P value | ||
|---|---|---|---|---|---|---|
| AMI patients | AMI patients | SAP patients | ||||
| Age (mean ± SD) | 63.00±7.66 | 64.70±12.03 | 65.63±10.36 | 0.506 | 0.717 | 0.157a |
| Gender (female/male) | 9/21 | 6/24 | 8/22 | 0.488 | 0.630 | 0.8305b |
| BMI | 24.70±3.75 | 24.75±1.98 | 25.10±3.01 | 0.751 | 0.882 | 0.545a |
| Smoking, number (%) | 9 (30.00) | 22 (73.33) | 18 (60.00) | 0.055 | 0.624 | 0.1481b |
| Drinking, number (%) | 6 (20.00) | 15 (50.00) | 15 (50.00) | 0.089 | 1.000 | 0.089b |
| Glucose | 5.27±0.67 | 6.50±1.42 | 5.33±0.53 | <0.0001*** | <0.0001*** | 0.545a |
| HbA1c | 5.52±0.31 | 5.91±0.64 | 5.68±0.45 | 0.003** | 0.079 | 0.204a |
| TG | 1.61±0.87 | 1.27±0.70 | 1.67±0.90 | 0.099 | 0.018* | 0.614a |
| TC | 4.54±0.83 | 4.67±0.90 | 4.41±1.02 | 0.897 | 0.408 | 0.735a |
| HDL | 1.18±0.25 | 1.36±1.18 | 1.18±0.24 | 0.740 | 0.865 | 0.954a |
| LDL | 2.74±0.68 | 2.86±0.75 | 2.48±0.86 | 0.323 | 0.128 | 0.471a |
| cRE | 63.42±13.45 | 77.74±20.68 | 71.69±14.70 | 0.002** | 0.186 | 0.053a |
| WBC | 5.25±1.27 | 9.88±3.23 | 6.40±2.09 | <0.0001*** | <0.0001*** | 0.007**a |
| Platelet | 183.94±47.14 | 196.27±78.67 | 189.60±66.10 | 0.755 | 0.848 | 0.812a |
| CRP | 1.12±2.15 | 7.42±9.78 | 5.02±7.61 | <0.0001*** | 0.032* | <0.0001***a |
| Hemoglobin | 137.74±17.98 | 139.90±38.59 | 136.00±13.43 | 0.702 | 0.877 | 0.801a |
| ALT | 24.32±17.95 | 43.48±20.01 | 30.22±28.41 | <0.0001*** | <0.0001*** | 0.151a |
| AST | 24.05±8.26 | 207.33±176.54 | 90.50±319.68 | <0.0001*** | <0.0001*** | 0.334a |
| TNI | 0.01±0.01 | 22.66±23.21 | 0.05±0.1 | <0.0001*** | <0.0001*** | <0.0001***a |
| CK | 91.52±61.19 | 1,711.66±1,569.89 | 122.33±241.26 | <0.0001*** | <0.0001*** | 0.644a |
| CK-MB | 11.31±8.43 | 187.40±189.77 | 10.49±5.38 | <0.0001*** | <0.0001*** | 0.965a |
| LDH | 172.52±39.22 | 540.40±403.60 | 190.10±90.57 | <0.0001*** | <0.0001*** | 0.840a |
| SBP | 130.65±12.21 | 125.70±18.78 | 135.10±14.79 | 0.155 | 0.030* | 0.220a |
| DBP | 80.58±12.79 | 75.77±12.53 | 77.90±11.28 | 0.195 | 0.395 | 0.470a |
| Heart rate | 73.16±13.11 | 74.77±15.73 | 70.50±10.84 | 0.390 | 0.115 | 0.105a |
a, the P value was analyzed using the Mann-Whitney U test; b, the P value was analyzed using chi-squared test. *, P<0.05; **, P<0.01; ***, P<0.001. AMI, acute myocardial infarction; SAP, stable angina pectoris; BMI, body mass index; HbA1c, glycosylated hemoglobin; TG, triglyceride; TC, total serum cholesterol; HDL, high-density lipoprotein; LDL, low-density lipoprotein; cRE, creatinine; WBC, white blood cells; CRP, C-reactive protein; ALT, alanine aminotransferase; AST, aspartate aminotransferase; SBP, systolic blood pressure; DBP, diastolic blood pressure.
Correlation analysis of differentially expressed proteins and clinical data
| APOE | AATC | FINC | HbA1c | Age | HDL | LDL | WBC | BMI | ||
|---|---|---|---|---|---|---|---|---|---|---|
| APOE | rs | 1.000 | 0.012 | −0.140 | 0.397 | −0.076 | −0.295 | 0.129 | −0.023 | −0.021 |
| Pa | 0.953 | 0.486 | 0.040* | 0.707 | 0.135 | 0.523 | 0.908 | 0.916 | ||
| AATC | rs | 1.000 | 0.059 | 0.159 | −0.448 | −0.402 | −0.064 | 0.023 | −0.009 | |
| Pa | 0.771 | 0.428 | 0.019 | 0.038* | 0.750 | 0.910 | 0.965 | |||
| FINC | rs | 1.000 | −0.047 | −0.131 | −0.032 | 0.029 | 0.379 | 0.406 | ||
| Pa | 0.805 | 0.491 | 0.866 | 0.879 | 0.039* | 0.026* | ||||
| HbA1c | rs | 1.000 | −0.336 | −0.142 | 0.050 | 0.239 | −0.048 | |||
| Pa | 0.069 | 0.454 | 0.794 | 0.203 | 0.800 | |||||
| Age | rs | 1.000 | 0.265 | 0.039 | −0.049 | −0.104 | ||||
| Pa | 0.157 | 0.838 | 0.796 | 0.584 | ||||||
| HDL | rs | 1.000 | −0.133 | 0.081 | −0.111 | |||||
| Pa | 0.485 | 0.672 | 0.560 | |||||||
| LDL | rs | 1.000 | 0.090 | 0.218 | ||||||
| Pa | 0.637 | 0.247 | ||||||||
| WBC | rs | 1.000 | 0.408* | |||||||
| Pa | 0.025 | |||||||||
| BMI | rs | 1.000 | ||||||||
| Pa |
*, correlation is significant at the 0.05 level (two-tailed). APOE, apolipoprotein E; AATC, aspartate aminotransferase; FINC, fibronectin; HbA1c, glycosylated hemoglobin; HDL, high-density lipoprotein; LDL, low-density lipoprotein; WBC, white blood cells; BMI, body mass index.
Figure 4ROC curve analyses of decision tree diagnostic models. Efficacy of the diagnostic model consisting of AATC, LDH, and CK in discriminating AMI patients from healthy controls (A); and efficacy of the diagnostic model consisting of AATC and CK in discriminating AMI patients from SAP patients (B). ROC, receiver operating characteristic curve; AATC, aspartate aminotransferase; LDH, lactate dehydrogenase; CK, creatine kinase; AMI, acute myocardial infarction; AATC, aspartate aminotransferase; SAP, stable angina pectoris.