Literature DB >> 34267606

Network Granger Causality with Inherent Grouping Structure.

Sumanta Basu1, Ali Shojaie2, George Michailidis1.   

Abstract

The problem of estimating high-dimensional network models arises naturally in the analysis of many biological and socio-economic systems. In this work, we aim to learn a network structure from temporal panel data, employing the framework of Granger causal models under the assumptions of sparsity of its edges and inherent grouping structure among its nodes. To that end, we introduce a group lasso regression regularization framework, and also examine a thresholded variant to address the issue of group misspecification. Further, the norm consistency and variable selection consistency of the estimates are established, the latter under the novel concept of direction consistency. The performance of the proposed methodology is assessed through an extensive set of simulation studies and comparisons with existing techniques. The study is illustrated on two motivating examples coming from functional genomics and financial econometrics.

Entities:  

Keywords:  Granger causality; group lasso; high dimensional networks; panel vector autoregression model; thresholding

Year:  2015        PMID: 34267606      PMCID: PMC8278320     

Source DB:  PubMed          Journal:  J Mach Learn Res        ISSN: 1532-4435            Impact factor:   5.177


  11 in total

1.  Consistent group selection in high-dimensional linear regression.

Authors:  Fengrong Wei; Jian Huang
Journal:  Bernoulli (Andover)       Date:  2010-11       Impact factor: 1.595

Review 2.  Inferring cellular networks using probabilistic graphical models.

Authors:  Nir Friedman
Journal:  Science       Date:  2004-02-06       Impact factor: 47.728

3.  Modeling T-cell activation using gene expression profiling and state-space models.

Authors:  Claudia Rangel; John Angus; Zoubin Ghahramani; Maria Lioumi; Elizabeth Sotheran; Alessia Gaiba; David L Wild; Francesco Falciani
Journal:  Bioinformatics       Date:  2004-02-12       Impact factor: 6.937

4.  Penalized likelihood methods for estimation of sparse high-dimensional directed acyclic graphs.

Authors:  Ali Shojaie; George Michailidis
Journal:  Biometrika       Date:  2010-07-09       Impact factor: 2.445

5.  Penalized methods for bi-level variable selection.

Authors:  Patrick Breheny; Jian Huang
Journal:  Stat Interface       Date:  2009-07-01       Impact factor: 0.582

6.  Purification of TCF-1 alpha, a T-cell-specific transcription factor that activates the T-cell receptor C alpha gene enhancer in a context-dependent manner.

Authors:  M L Waterman; K A Jones
Journal:  New Biol       Date:  1990-07

7.  Discovering graphical Granger causality using the truncating lasso penalty.

Authors:  Ali Shojaie; George Michailidis
Journal:  Bioinformatics       Date:  2010-09-15       Impact factor: 6.937

8.  A group bridge approach for variable selection.

Authors:  Jian Huang; Shuange Ma; Huiliang Xie; Cun-Hui Zhang
Journal:  Biometrika       Date:  2009-06       Impact factor: 2.445

9.  Grouped graphical Granger modeling for gene expression regulatory networks discovery.

Authors:  Aurélie C Lozano; Naoki Abe; Yan Liu; Saharon Rosset
Journal:  Bioinformatics       Date:  2009-06-15       Impact factor: 6.937

10.  Modeling gene expression regulatory networks with the sparse vector autoregressive model.

Authors:  André Fujita; João R Sato; Humberto M Garay-Malpartida; Rui Yamaguchi; Satoru Miyano; Mari C Sogayar; Carlos E Ferreira
Journal:  BMC Syst Biol       Date:  2007-08-30
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  1 in total

1.  Statistical Perspective on Functional and Causal Neural Connectomics: A Comparative Study.

Authors:  Rahul Biswas; Eli Shlizerman
Journal:  Front Syst Neurosci       Date:  2022-03-02
  1 in total

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