| Literature DB >> 34267597 |
Nicolas Sauvion1,2, Jean Peccoud3, Christine N Meynard4,1, David Ouvrard5.
Abstract
BACKGROUND: Cacopsylla pruni is a psyllid that has been known since 1998 as the vector of the bacterium 'Candidatus Phytoplasma prunorum', responsible for the European stone fruit yellows (ESFY), a disease that affects species of Prunus. This disease is one of the major limiting factors for the production of stone fruits, most notably apricot (Prunus armeniaca) and Japanese plum (P. salicina), in all EU stone fruit-growing areas. The psyllid vector is widespread in the Western Palearctic and evidence for the presence of the phytoplasma that it transmits to species of Prunus has been found in 15 of the 27 EU countries.Recent studies showed that C. pruni is actually composed of two cryptic species that can be differentiated by molecular markers. A literature review on the distribution of C. pruni was published in 2012, but it only provided presence or absence information at the country level and without distinction between the two cryptic species.Since 2012, numerous new records of the vector in several European countries have been published. We ourselves have acquired a large amount of data from sampling in France and other European countries. We have also carried out a thorough systematic literature review to find additional records, including all the original sources mentioning C. pruni (or its synonyms) since the first description by Scopoli in 1763. Our aim was to create an exhaustive georeferenced occurrence catalogue, in particular in countries that are occasionally mentioned in literature with little detail. Finally, for countries that seem suitable for the proliferation of C. pruni (USA, Canada, Japan, China etc.), we dug deeper into literature and reliable sources (e.g. published checklists) to better substantiate its current absence from those regions.Information on the distribution ranges of these vector psyllids is of crucial interest in order to best predict the vulnerability of stone fruit producing countries to the ESFY threat in the foreseeable future. NEW INFORMATION: We give free access to a unique file of 1975 records of all occurrence data in our possession concerning C. pruni, that we have gathered through more than twenty years of sampling efforts in Europe or through intensive text mining.We have made every effort to retrieve the source information for the records extracted from literature (1201 records). Thus, we always give the title of the original reference, together with the page(s) citing C. pruni and, if possible, the year of sampling. To make the results of this survey publicly available, we give a URL to access the literature sources. In most cases, this link allows free downloads of a PDF file.We also give access to information extracted from GBIF (162 exploitable data points on 245 occurrences found in the database), which we thoroughly checked and often supplemented to make the information more easily exploitable.We give access to our own unpublished georeferenced and genotyped records from 612 samples taken over the last 20 years in several European countries (Switzerland, Belgium, Netherlands, Spain etc.). These include two countries (Portugal and North Macedonia), for which the presence of C. pruni had not been reported before. As our specimens have been genotyped (74 sites with species A solely, 202 with species B solely and 310 with species A+B), our new data enable a better overview of the geographical distribution of the two cryptic species at the Palaearctic scale. Nicolas Sauvion, Jean Peccoud, Christine N Meynard, David Ouvrard.Entities:
Keywords: Hemiptera ; 'Candidatus phytoplasma prunorum'; Cacopsylla pruni; European stone fruit yellows; epidemiology; phytoplasma; psyllid; species distribution; vector-borne plant pathogen
Year: 2021 PMID: 34267597 PMCID: PMC8266796 DOI: 10.3897/BDJ.9.e68860
Source DB: PubMed Journal: Biodivers Data J ISSN: 1314-2828
Figure 1.Excerpt from a 1974 article from Loginova referring to , with translation and information about one of the localities cited, Hamar data. After Loginova (1974).
Figure 2.Global map of the 1716 occurrence data available in the dataset (map generated with QGIS 3.14). The map shows the distribution of cryptic species A (green dots) and B (red dots) according to available data. However, most of the data from the literature (black dots), GBIF (orange dots) or the catalogue of the "Faune de France" (currently being published) do not allow a distinction to be made between cryptic species.
Figure 3.Occurrence data of in the Western Palaearctic, obtained from our literature survey (map generated with QGIS 3.14).
Figure 4.Examples of metadata accessible on the website of the Natural History Museum from links associated with GBIF references (e.g. https://www.gbif.org/occurrence/1265697015).
Figure 5.Occurrence data of in Western Palaearctic from the GBIF database (map generated with QGIS 3.14).
Figure 6.Occurrence data of species of A in Western Palaearctic from sampling carried out by INRAE-Montpellier (map generated with QGIS 3.14).
Figure 7.Occurrence data of species of B in Western Palaearctic from sampling carried out by INRAE-Montpellier (map generated with QGIS 3.14).
| Column label | Column description |
|---|---|
| catalogNumber | An identifier which assigns a unique code to each of the 1975 records (NS0001 to NS1975). |
| phylum | The full scientific name of the phylum in which the taxon is classified. |
| class | The full scientific name of the class in which the taxon is classified. |
| order | The full scientific name of the order in which the taxon is classified. |
| suborder | The full scientific name of the suborder in which the taxon is classified. |
| superfamily | The full scientific name of the superfamily in which the taxon is classified. |
| family | The full scientific name of the family in which the taxon is classified. |
| subfamily | The full scientific name of the subfamily in which the taxon is classified. |
| genus | The full scientific name of the genus in which the taxon is classified. |
| acceptedNameUsage | The full name, with authorship and date information of the currently valid (zoological) taxon. |
| Occurrence | An existence of an Organism (sensu |
| speciesA | Information concerning the assignment of the specimens of a population (i.e. caught on the same day in the same locality on the same host plant) to species A of |
| speciesB | Information concerning the assignment of the specimens of a population (i.e. caught on the same day in the same locality on the same host plant) to species B of |
| country | Names of the countries where the individual(s) attributed to |
| countryCode | Two-letter country codes defined in ISO 3166-1, part of the ISO 3166 standard to represent countries where species have been described. |
| locationRemarks | Comments or notes about the location. |
| locality | The specific description of the place. The locality is given as accurately as possible (precise address, village, town), but may sometimes be imprecise (e.g. mountain, region) or even absent (NA="locality not stated"). See column "coordinateUncertaintyInMetres" for more details on uncertainty. |
| coordinateUncertaintyInMetres | The horizontal distance (in metres) from the given decimalLatitude and decimalLongitude describing the smallest circle containing the whole of the Location. Leave the value empty if the uncertainty is unknown, cannot be estimated or is not applicable (because there are no coordinates). Zero is not a valid value for this term, for example, 30 m = margin of error in the measurement of coordinates using a GPS navigator; 1000 or 10000 m = uncertainty attributed to most locality names in literature, in the absence of more precise information; 50000 m = uncertainty when only the name of the region/province is known. |
| decimalLatitude | The geographic latitude (in decimal degrees according to the geodetic coordinate reference system EPSG 4326) of the geographic centre of a location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive. |
| decimalLongitude | The geographic longitude (in decimal degrees according to the geodetic coordinate reference system EPSG 4326) of the geographic centre of a location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive. |
| hostPlantFamily | Six modalities: " |
| hostPlantLatinName | Latin name of the host plant species (i.e. host plant sensu stricto, shelter plant or casual plant) according to the International Code of Nomenclature for algae, fungi and plants ( |
| hostPlantVernacularName | Vernacular English name of the host plant species. |
| sourceCategory | The three different sources of information used to compile the dataset: "GBIF" (i.e. data from the Global Biodiversity Information Facility); "literature" (i.e. any data resulting from a text-mining from different sources - manuscript, book, article etc. - accessible or not on the web); "INRAE" (i.e. data from collections by INRAE Montpellier, not published to date). |
| ownerInstitutionCode | The name (or acronym) in use by the institution having ownership of the object(s) or information referred to in the record. |
| locationAccordingTo | Information about the source of this Location information. Could be a publication (gazetteer), institution or team of individuals. Here, detailed title of the original reference associated with the locality; "no data" (i.e. no information found for a particular country, for example, Kyrgyzstan, Malta). |
| dateIdentified | The date on which the subject was determined as representing the Taxon. Here, year of publication of the reference cited in the "locationAccordingTo" column. |
| page | Page where the original information about the locality can be found in the reference cited in the "locationAccordingTo" column. |
| eventDate | The date-time or interval during which an Event occurred. For occurrences, this is the date-time when the event was recorded. Here, year(s) or date of sampling or observation in the locality according to the information in the "locationAccordingTo" column.'1996' (some time in the year 1996). '2010-06' (some time in June 2010). '2010-02-12' (some time during 12 February 2010). '2007/2010' (some time during the interval between the beginning of the year 2007 and the end of the year 2010). |
| associatedReferences | A list (concatenated and separated) of identifiers (publication, bibliographic reference, global unique identifier, URI) of literature associated with the occurrence. Here, URL by which the original information can be retrieved (downloadable PDF file in open access, link to the publisher of a non-open access reference, direct link to the original GBIF occurrence etc.). |