Literature DB >> 34261126

SARS-CoV-2 RBD antibodies that maximize breadth and resistance to escape.

Tyler N Starr1, Nadine Czudnochowski2, Zhuoming Liu3, Fabrizia Zatta4, Young-Jun Park5, Amin Addetia1, Dora Pinto4, Martina Beltramello4, Patrick Hernandez2, Allison J Greaney1,6, Roberta Marzi4, William G Glass7, Ivy Zhang7,8, Adam S Dingens1, John E Bowen5, M Alejandra Tortorici5, Alexandra C Walls5, Jason A Wojcechowskyj2, Anna De Marco4, Laura E Rosen2, Jiayi Zhou2, Martin Montiel-Ruiz2, Hannah Kaiser2, Josh R Dillen2, Heather Tucker2, Jessica Bassi4, Chiara Silacci-Fregni4, Michael P Housley2, Julia di Iulio2, Gloria Lombardo4, Maria Agostini2, Nicole Sprugasci4, Katja Culap4, Stefano Jaconi4, Marcel Meury2, Exequiel Dellota2, Rana Abdelnabi9, Shi-Yan Caroline Foo9, Elisabetta Cameroni4, Spencer Stumpf3, Tristan I Croll10, Jay C Nix11, Colin Havenar-Daughton2, Luca Piccoli4, Fabio Benigni4, Johan Neyts9, Amalio Telenti2, Florian A Lempp2, Matteo S Pizzuto4, John D Chodera7, Christy M Hebner2, Herbert W Virgin2,12,13, Sean P J Whelan3, David Veesler5, Davide Corti14, Jesse D Bloom15,16,17, Gyorgy Snell18.   

Abstract

An ideal therapeutic anti-SARS-CoV-2 antibody would resist viral escape1-3, have activity against diverse sarbecoviruses4-7, and be highly protective through viral neutralization8-11 and effector functions12,13. Understanding how these properties relate to each other and vary across epitopes would aid the development of therapeutic antibodies and guide vaccine design. Here we comprehensively characterize escape, breadth and potency across a panel of SARS-CoV-2 antibodies targeting the receptor-binding domain (RBD). Despite a trade-off between in vitro neutralization potency and breadth of sarbecovirus binding, we identify neutralizing antibodies with exceptional sarbecovirus breadth and a corresponding resistance to SARS-CoV-2 escape. One of these antibodies, S2H97, binds with high affinity across all sarbecovirus clades to a cryptic epitope and prophylactically protects hamsters from viral challenge. Antibodies that target the angiotensin-converting enzyme 2 (ACE2) receptor-binding motif (RBM) typically have poor breadth and are readily escaped by mutations despite high neutralization potency. Nevertheless, we also characterize a potent RBM antibody (S2E128) with breadth across sarbecoviruses related to SARS-CoV-2 and a high barrier to viral escape. These data highlight principles underlying variation in escape, breadth and potency among antibodies that target the RBD, and identify epitopes and features to prioritize for therapeutic development against the current and potential future pandemics.
© 2021. The Author(s), under exclusive licence to Springer Nature Limited.

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Year:  2021        PMID: 34261126      PMCID: PMC9282883          DOI: 10.1038/s41586-021-03807-6

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   69.504


  88 in total

1.  Early Treatment for Covid-19 with SARS-CoV-2 Neutralizing Antibody Sotrovimab.

Authors:  Anil Gupta; Yaneicy Gonzalez-Rojas; Erick Juarez; Manuel Crespo Casal; Jaynier Moya; Diego R Falci; Elias Sarkis; Joel Solis; Hanzhe Zheng; Nicola Scott; Andrea L Cathcart; Christy M Hebner; Jennifer Sager; Erik Mogalian; Craig Tipple; Amanda Peppercorn; Elizabeth Alexander; Phillip S Pang; Almena Free; Cynthia Brinson; Melissa Aldinger; Adrienne E Shapiro
Journal:  N Engl J Med       Date:  2021-10-27       Impact factor: 91.245

2.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

3.  Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies.

Authors:  Dami A Collier; Anna De Marco; Isabella A T M Ferreira; Bo Meng; Rawlings P Datir; Alexandra C Walls; Steven A Kemp; Jessica Bassi; Dora Pinto; Chiara Silacci-Fregni; Siro Bianchi; M Alejandra Tortorici; John Bowen; Katja Culap; Stefano Jaconi; Elisabetta Cameroni; Gyorgy Snell; Matteo S Pizzuto; Alessandra Franzetti Pellanda; Christian Garzoni; Agostino Riva; Anne Elmer; Nathalie Kingston; Barbara Graves; Laura E McCoy; Kenneth G C Smith; John R Bradley; Nigel Temperton; Lourdes Ceron-Gutierrez; Gabriela Barcenas-Morales; William Harvey; Herbert W Virgin; Antonio Lanzavecchia; Luca Piccoli; Rainer Doffinger; Mark Wills; David Veesler; Davide Corti; Ravindra K Gupta
Journal:  Nature       Date:  2021-03-11       Impact factor: 69.504

4.  N-terminal domain antigenic mapping reveals a site of vulnerability for SARS-CoV-2.

Authors:  Matthew McCallum; Anna De Marco; Florian A Lempp; M Alejandra Tortorici; Dora Pinto; Alexandra C Walls; Martina Beltramello; Alex Chen; Zhuoming Liu; Fabrizia Zatta; Samantha Zepeda; Julia di Iulio; John E Bowen; Martin Montiel-Ruiz; Jiayi Zhou; Laura E Rosen; Siro Bianchi; Barbara Guarino; Chiara Silacci Fregni; Rana Abdelnabi; Shi-Yan Caroline Foo; Paul W Rothlauf; Louis-Marie Bloyet; Fabio Benigni; Elisabetta Cameroni; Johan Neyts; Agostino Riva; Gyorgy Snell; Amalio Telenti; Sean P J Whelan; Herbert W Virgin; Davide Corti; Matteo Samuele Pizzuto; David Veesler
Journal:  Cell       Date:  2021-03-16       Impact factor: 41.582

5.  A human coronavirus evolves antigenically to escape antibody immunity.

Authors:  Rachel T Eguia; Katharine H D Crawford; Terry Stevens-Ayers; Laurel Kelnhofer-Millevolte; Alexander L Greninger; Janet A Englund; Michael J Boeckh; Jesse D Bloom
Journal:  PLoS Pathog       Date:  2021-04-08       Impact factor: 6.823

6.  Comprehensive mapping of mutations in the SARS-CoV-2 receptor-binding domain that affect recognition by polyclonal human plasma antibodies.

Authors:  Allison J Greaney; Andrea N Loes; Katharine H D Crawford; Tyler N Starr; Keara D Malone; Helen Y Chu; Jesse D Bloom
Journal:  Cell Host Microbe       Date:  2021-02-08       Impact factor: 21.023

7.  UCSF ChimeraX: Structure visualization for researchers, educators, and developers.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Elaine C Meng; Gregory S Couch; Tristan I Croll; John H Morris; Thomas E Ferrin
Journal:  Protein Sci       Date:  2020-10-22       Impact factor: 6.993

8.  Mitigating local over-fitting during single particle reconstruction with SIDESPLITTER.

Authors:  Kailash Ramlaul; Colin M Palmer; Takanori Nakane; Christopher H S Aylett
Journal:  J Struct Biol       Date:  2020-06-10       Impact factor: 2.867

9.  A Novel Bat Coronavirus Closely Related to SARS-CoV-2 Contains Natural Insertions at the S1/S2 Cleavage Site of the Spike Protein.

Authors:  Hong Zhou; Xing Chen; Tao Hu; Juan Li; Hao Song; Yanran Liu; Peihan Wang; Di Liu; Jing Yang; Edward C Holmes; Alice C Hughes; Yuhai Bi; Weifeng Shi
Journal:  Curr Biol       Date:  2020-05-11       Impact factor: 10.834

10.  Studies in humanized mice and convalescent humans yield a SARS-CoV-2 antibody cocktail.

Authors:  Johanna Hansen; Alina Baum; Kristen E Pascal; Vincenzo Russo; Stephanie Giordano; Elzbieta Wloga; Benjamin O Fulton; Ying Yan; Katrina Koon; Krunal Patel; Kyung Min Chung; Aynur Hermann; Erica Ullman; Jonathan Cruz; Ashique Rafique; Tammy Huang; Jeanette Fairhurst; Christen Libertiny; Marine Malbec; Wen-Yi Lee; Richard Welsh; Glen Farr; Seth Pennington; Dipali Deshpande; Jemmie Cheng; Anke Watty; Pascal Bouffard; Robert Babb; Natasha Levenkova; Calvin Chen; Bojie Zhang; Annabel Romero Hernandez; Kei Saotome; Yi Zhou; Matthew Franklin; Sumathi Sivapalasingam; David Chien Lye; Stuart Weston; James Logue; Robert Haupt; Matthew Frieman; Gang Chen; William Olson; Andrew J Murphy; Neil Stahl; George D Yancopoulos; Christos A Kyratsous
Journal:  Science       Date:  2020-06-15       Impact factor: 47.728

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  114 in total

Review 1.  Monoclonal antibodies for COVID-19 therapy and SARS-CoV-2 detection.

Authors:  Yu-Chyi Hwang; Ruei-Min Lu; Shih-Chieh Su; Pao-Yin Chiang; Shih-Han Ko; Feng-Yi Ke; Kang-Hao Liang; Tzung-Yang Hsieh; Han-Chung Wu
Journal:  J Biomed Sci       Date:  2022-01-04       Impact factor: 8.410

2.  Lectins enhance SARS-CoV-2 infection and influence neutralizing antibodies.

Authors:  Amalio Telenti; Davide Corti; Florian A Lempp; Leah B Soriaga; Martin Montiel-Ruiz; Fabio Benigni; Julia Noack; Young-Jun Park; Siro Bianchi; Alexandra C Walls; John E Bowen; Jiayi Zhou; Hannah Kaiser; Anshu Joshi; Maria Agostini; Marcel Meury; Exequiel Dellota; Stefano Jaconi; Elisabetta Cameroni; Javier Martinez-Picado; Júlia Vergara-Alert; Nuria Izquierdo-Useros; Herbert W Virgin; Antonio Lanzavecchia; David Veesler; Lisa A Purcell
Journal:  Nature       Date:  2021-08-31       Impact factor: 49.962

3.  Improvement of the inactivated SARS-CoV-2 vaccine potency through formulation in alum/naloxone adjuvant; Robust T cell and anti-RBD IgG responses.

Authors:  Melika Haghighi; Akbar Khorasani; Pegah Karimi; Mehdi Mahdavi
Journal:  Iran J Basic Med Sci       Date:  2022-05       Impact factor: 2.532

Review 4.  SARS-CoV-2-neutralising monoclonal antibodies for treatment of COVID-19.

Authors:  Nina Kreuzberger; Caroline Hirsch; Khai Li Chai; Eve Tomlinson; Zahra Khosravi; Maria Popp; Miriam Neidhardt; Vanessa Piechotta; Susanne Salomon; Sarah J Valk; Ina Monsef; Christoph Schmaderer; Erica M Wood; Cynthia So-Osman; David J Roberts; Zoe McQuilten; Lise J Estcourt; Nicole Skoetz
Journal:  Cochrane Database Syst Rev       Date:  2021-09-02

5.  Passive immunization with equine RBD-specific Fab protects K18-hACE2-mice against Alpha or Beta variants of SARS-CoV-2.

Authors:  Mariette Barbier; Katherine S Lee; Mayur S Vikharankar; Shriram N Rajpathak; Nandkumar Kadam; Ting Y Wong; Brynnan P Russ; Holly A Cyphert; Olivia A Miller; Nathaniel A Rader; Melissa Cooper; Jason Kang; Emel Sen-Kilic; Zeriel Y Wong; Michael T Winters; Justin R Bevere; Ivan Martinez; Rachayya Devarumath; Umesh S Shaligram; F Heath Damron
Journal:  Front Immunol       Date:  2022-08-15       Impact factor: 8.786

6.  Targeted isolation of diverse human protective broadly neutralizing antibodies against SARS-like viruses.

Authors:  Wan-Ting He; Rami Musharrafieh; Ge Song; Katharina Dueker; Longping V Tse; David R Martinez; Alexandra Schäfer; Sean Callaghan; Peter Yong; Nathan Beutler; Jonathan L Torres; Reid M Volk; Panpan Zhou; Meng Yuan; Hejun Liu; Fabio Anzanello; Tazio Capozzola; Mara Parren; Elijah Garcia; Stephen A Rawlings; Davey M Smith; Ian A Wilson; Yana Safonova; Andrew B Ward; Thomas F Rogers; Ralph S Baric; Lisa E Gralinski; Dennis R Burton; Raiees Andrabi
Journal:  Nat Immunol       Date:  2022-06-02       Impact factor: 31.250

7.  Imprinted antibody responses against SARS-CoV-2 Omicron sublineages.

Authors:  Young-Jun Park; Dora Pinto; Alexandra C Walls; Zhuoming Liu; Anna De Marco; Fabio Benigni; Fabrizia Zatta; Chiara Silacci-Fregni; Jessica Bassi; Kaitlin R Sprouse; Amin Addetia; John E Bowen; Cameron Stewart; Martina Giurdanella; Christian Saliba; Barbara Guarino; Michael A Schmid; Nicholas Franko; Jennifer Logue; Ha V Dang; Kevin Hauser; Julia di Iulio; William Rivera; Gretja Schnell; Florian A Lempp; Javier Janer; Rana Abdelnabi; Piet Maes; Paolo Ferrari; Alessandro Ceschi; Olivier Giannini; Guilherme Dias de Melo; Lauriane Kergoat; Hervé Bourhy; Johan Neyts; Leah Soriaga; Lisa A Purcell; Gyorgy Snell; Sean P J Whelan; Antonio Lanzavecchia; Herbert W Virgin; Luca Piccoli; Helen Chu; Matteo Samuele Pizzuto; Davide Corti; David Veesler
Journal:  bioRxiv       Date:  2022-06-02

8.  Potent human broadly SARS-CoV-2-neutralizing IgA and IgG antibodies effective against Omicron BA.1 and BA.2.

Authors:  Timothée Bruel; Guilherme Dias de Melo; Matthieu Prot; Etienne Simon-Lorière; Hervé Bourhy; Xavier Montagutelli; Félix A Rey; Olivier Schwartz; Cyril Planchais; Ignacio Fernández; Maxime Beretta; Pablo Guardado-Calvo; Jérémy Dufloo; Luis M Molinos-Albert; Marija Backovic; Jeanne Chiaravalli; Emilie Giraud; Benjamin Vesin; Laurine Conquet; Ludivine Grzelak; Delphine Planas; Isabelle Staropoli; Florence Guivel-Benhassine; Thierry Hieu; Mikaël Boullé; Minerva Cervantes-Gonzalez; Marie-Noëlle Ungeheuer; Pierre Charneau; Sylvie van der Werf; Fabrice Agou; Jordan D Dimitrov; Hugo Mouquet
Journal:  J Exp Med       Date:  2022-06-15       Impact factor: 17.579

9.  Converting non-neutralizing SARS-CoV-2 antibodies into broad-spectrum inhibitors.

Authors:  Payton A-B Weidenbacher; Eric Waltari; Izumi de Los Rios Kobara; Benjamin N Bell; Mary Kate Morris; Ya-Chen Cheng; Carl Hanson; John E Pak; Peter S Kim
Journal:  Nat Chem Biol       Date:  2022-09-08       Impact factor: 16.174

10.  An antibody-escape estimator for mutations to the SARS-CoV-2 receptor-binding domain.

Authors:  Allison J Greaney; Tyler N Starr; Jesse D Bloom
Journal:  Virus Evol       Date:  2022-05-11
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