Literature DB >> 34260720

Integrated digital pathology at scale: A solution for clinical diagnostics and cancer research at a large academic medical center.

Peter J Schüffler1,2, Luke Geneslaw1, D Vijay K Yarlagadda1, Matthew G Hanna1, Jennifer Samboy1, Evangelos Stamelos1, Chad Vanderbilt1, John Philip1,3, Marc-Henri Jean1, Lorraine Corsale1, Allyne Manzo1, Neeraj H G Paramasivam4, John S Ziegler1, Jianjiong Gao5, Juan C Perin4, Young Suk Kim6, Umeshkumar K Bhanot1, Michael H A Roehrl1,7, Orly Ardon1, Sarah Chiang1, Dilip D Giri1, Carlie S Sigel1, Lee K Tan1, Melissa Murray1, Christina Virgo1, Christine England1, Yukako Yagi1, S Joseph Sirintrapun1, David Klimstra1, Meera Hameed1, Victor E Reuter1, Thomas J Fuchs1,8.   

Abstract

OBJECTIVE: Broad adoption of digital pathology (DP) is still lacking, and examples for DP connecting diagnostic, research, and educational use cases are missing. We blueprint a holistic DP solution at a large academic medical center ubiquitously integrated into clinical workflows; researchapplications including molecular, genetic, and tissue databases; and educational processes.
MATERIALS AND METHODS: We built a vendor-agnostic, integrated viewer for reviewing, annotating, sharing, and quality assurance of digital slides in a clinical or research context. It is the first homegrown viewer cleared by New York State provisional approval in 2020 for primary diagnosis and remote sign-out during the COVID-19 (coronavirus disease 2019) pandemic. We further introduce an interconnected Honest Broker for BioInformatics Technology (HoBBIT) to systematically compile and share large-scale DP research datasets including anonymized images, redacted pathology reports, and clinical data of patients with consent.
RESULTS: The solution has been operationally used over 3 years by 926 pathologists and researchers evaluating 288 903 digital slides. A total of 51% of these were reviewed within 1 month after scanning. Seamless integration of the viewer into 4 hospital systems clearly increases the adoption of DP. HoBBIT directly impacts the translation of knowledge in pathology into effective new health measures, including artificial intelligence-driven detection models for prostate cancer, basal cell carcinoma, and breast cancer metastases, developed and validated on thousands of cases.
CONCLUSIONS: We highlight major challenges and lessons learned when going digital to provide orientation for other pathologists. Building interconnected solutions will not only increase adoption of DP, but also facilitate next-generation computational pathology at scale for enhanced cancer research.
© The Author(s) 2021. Published by Oxford University Press on behalf of the American Medical Informatics Association.

Entities:  

Keywords:  artificial intelligence; computational pathology; digital pathology; honest broker, pathology; whole slide imaging

Year:  2021        PMID: 34260720     DOI: 10.1093/jamia/ocab085

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  7 in total

Review 1.  A community-based approach to image analysis of cells, tissues and tumors.

Authors:  Juan Carlos Vizcarra; Erik A Burlingame; Clemens B Hug; Yury Goltsev; Brian S White; Darren R Tyson; Artem Sokolov
Journal:  Comput Med Imaging Graph       Date:  2021-11-19       Impact factor: 4.790

2.  Building Tools for Machine Learning and Artificial Intelligence in Cancer Research: Best Practices and a Case Study with the PathML Toolkit for Computational Pathology.

Authors:  Jacob Rosenthal; Ryan Carelli; Mohamed Omar; David Brundage; Ella Halbert; Jackson Nyman; Surya N Hari; Eliezer M Van Allen; Luigi Marchionni; Renato Umeton; Massimo Loda
Journal:  Mol Cancer Res       Date:  2021-12-08       Impact factor: 6.333

3.  Whole slide image data utilization informed by digital diagnosis patterns.

Authors:  Kimberly Ashman; Huimin Zhuge; Erin Shanley; Sharon Fox; Shams Halat; Andrew Sholl; Brian Summa; J Quincy Brown
Journal:  J Pathol Inform       Date:  2022-06-30

4.  DigiPatICS: Digital Pathology Transformation of the Catalan Health Institute Network of 8 Hospitals-Planification, Implementation, and Preliminary Results.

Authors:  Jordi Temprana-Salvador; Pablo López-García; Josep Castellví Vives; Lluís de Haro; Eudald Ballesta; Matias Rojas Abusleme; Miquel Arrufat; Ferran Marques; Josep R Casas; Carlos Gallego; Laura Pons; José Luis Mate; Pedro Luis Fernández; Eugeni López-Bonet; Ramon Bosch; Salomé Martínez; Santiago Ramón Y Cajal; Xavier Matias-Guiu
Journal:  Diagnostics (Basel)       Date:  2022-03-30

5.  FlexTileSource: An OpenSeadragon Extension for Efficient Whole-Slide Image Visualization.

Authors:  Peter J Schüffler; Gamze Gokturk Ozcan; Hikmat Al-Ahmadie; Thomas J Fuchs
Journal:  J Pathol Inform       Date:  2021-09-14

6.  Digital Pathology Implementation in Private Practice: Specific Challenges and Opportunities.

Authors:  Diana Montezuma; Ana Monteiro; João Fraga; Liliana Ribeiro; Sofia Gonçalves; André Tavares; João Monteiro; Isabel Macedo-Pinto
Journal:  Diagnostics (Basel)       Date:  2022-02-18

Review 7.  The Role of Artificial Intelligence in Early Cancer Diagnosis.

Authors:  Benjamin Hunter; Sumeet Hindocha; Richard W Lee
Journal:  Cancers (Basel)       Date:  2022-03-16       Impact factor: 6.639

  7 in total

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