| Literature DB >> 34260561 |
Ning Ma1, Xing-Hua Chen2, Yan Zhao1, Xu Kang1, Shan Pan1, Wen-Qing Yao1.
Abstract
INTRODUCTION: In recent years, with the development of molecular epidemiology, molecular transmission networks based on evolutionary theory and sequence analysis have been widely used in research on human immunodeficiency virus (HIV)-1 transmission dynamics and precise intervention for high-risk populations. The HIV-1 molecular transmission network is a new method to study the population's access to the network, the characteristics of clustering, and the characteristics of interconnection in the network. Here, we analyzed the characteristics of the HIV-1 molecular transmission network of sexually transmitted people in Liaoning Province.Entities:
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Year: 2021 PMID: 34260561 PMCID: PMC8284760 DOI: 10.1097/MD.0000000000026640
Source DB: PubMed Journal: Medicine (Baltimore) ISSN: 0025-7974 Impact factor: 1.889
Demographic characteristics of the study objects.
| Project | Median (IQR) | Frequency (%) |
| Gender | ||
| Male | 102 (93.6) | |
| Female | 7 (6.4) | |
| Age | 39 (28-52) | |
| Ethnicity | ||
| Han | 96 (88.1) | |
| Others | 13 (11.9) | |
| Educational level | ||
| Junior high school and below | 42 (38.5) | |
| High school or technical secondary school | 28 (25.7) | |
| College and above | 39 (35.8) | |
| Marital status | ||
| Unmarried | 53 (48.6) | |
| Married with spouse | 27 (24.8) | |
| Divorced or widowed | 29 (26.6) | |
| Place of residence | ||
| Local | 92 (84.4) | |
| Non local | 17 (15.6) | |
| Occupation | ||
| Housekeeping, housework and job hunting | 30 (27.5) | |
| Worker | 10 (9.2) | |
| Business waiter | 7 (6.4) | |
| Cadre staff | 10 (9.2) | |
| Retired | 10 (9.2) | |
| Farmer | 9 (8.3) | |
| Others and unknown | 33 (30.3) | |
| Route of infection | ||
| Male same-sex transmission | 83 (76.1) | |
| Heterosexual transmission | 26 (23.9) | |
| Sample source | ||
| Testing Consulting | 32 (29.4) | |
| STD clinic | 22 (20.2) | |
| Other visitor tests | 29 (26.6) | |
| Other sources | 26 (23.9) | |
| CD4 cells (cells /ul) | 181 (62-260) | |
| HIV viral load (copies /ml) | 49700 (13950-147000) | |
Figure 1Phylogenetic tree of HIV-1 subtype adjacency method. HIV = human immunodeficiency virus.
Drug resistance and mutation sites in 14 patients.
| Potential Low-Level Resistance | Low-Level Resistance | Intermediate Resistance | High-Level Resistance | ||||||
| Drug Classification | Number of cases | Mutations | Number of cases | Mutations | Number of cases | Mutations | Number of cases | Mutations | |
| Protease Inhibitors | atazanavir/r (ATV/r) | 2 | M46L|M46I | 1 | V82A | ||||
| fosamprenavir/r (FPV/r) | 5 | L33F|V82A|M46L|M46I | |||||||
| indinavir/r (IDV/r) | 2 | M46L|M46I | 1 | V82A | |||||
| lopinavir/r (LPV/r) | 2 | M46L|M46I | 1 | V82A | |||||
| saquinavir/r (SQV/r) | 2 | V82A|M46I | |||||||
| nelfinavir (NFV) | 2 | V82A|M46L | 2 | V82A|M46I | |||||
| tipranavir/r (TPV/r) | 2 | L33F|Q58E | |||||||
| Nucleoside Reverse Transcriptase Inhibitors | lamivudine (3TC) | 1 | K65R | ||||||
| abacavir (ABC) | 1 | K65R | |||||||
| zidovudine (AZT) | 1 | K219Q | 1 | T215A | |||||
| stavudine (D4T) | 2 | V75VI|K219Q | 1 | T215A | 1 | K65R | |||
| didanosine (DDI) | 1 | V75VI | 1 | K65R | |||||
| emtricitabine (FTC) | 1 | K65R | |||||||
| tenofovir (TDF) | 1 | K65R | |||||||
| Non-nucleoside Reverse Transcriptase Inhibitors | efavirenz (EFV) | 2 | V179D | 1 | A98G | 1 | Y181C+G190S | ||
| etravirine (ETR) | 3 | A98G|V106I|V179D | 1 | Y181C+G190S | |||||
| nevirapine (NVP) | 3 | V179E|V106I|V179D | 1 | A98G | 1 | Y181C+G190S | |||
| rilpivirine (RPV) | 2 | V106I|V179D | 1 | A98G | 1 | Y181C+G190S | |||
Figure 2HIV-1 molecular transmission network of sexually transmitted populations in Liaoning Province, China. HIV = human immunodeficiency virus.
Analysis of the influencing factors of HIV-1 entering the molecular transmission network of sexually transmitted people in Liaoning Province.
| One-factor logistic analysis | Multifactor Logistic Analysis | |||||
| Project | Total | Internet access rate (%) | ||||
| Gender | ||||||
| Male | 102 | 64 (62.7) | 0.238 (0.044-1.285) | .095 | ||
| Female | 7 | 2 (28.6) | 1 | |||
| Age | ||||||
| ≤30 | 36 | 22 (61.1) | 1 | |||
| 31-50 | 44 | 25 (56.8) | 1.194 (0.497–2.929) | .698 | ||
| > 50 | 29 | 19 (65.5) | 0.287 (0.299–2.288) | .715 | ||
| Ethnicity | ||||||
| Han | 96 | 60 (62.5) | 1 | |||
| Others | 13 | 6 (46.2) | 1.944 (0.606–6.241) | .264 | ||
| Educational level | ||||||
| Junior high school and below | 42 | 26 (61.9) | 1.099 (0.445–2.712) | .838 | ||
| High school or technical secondary school | 28 | 15 (53.6) | 1.548 (0.575–4.164) | .387 | ||
| College and above | 39 | 25 (64.1) | 1 | |||
| Marital status | ||||||
| Unmarried | 53 | 30 (56.6) | 0.944 (0.379–2.347) | .901 | ||
| Married with spouse | 30 | 20 (66.7) | 0.431 (0.139–1.333) | .144 | ||
| Divorced or widowed | 29 | 16 (55.2) | 1 | |||
| Place of residence | ||||||
| Local | 92 | 55 (59.8) | 1.233 (0.419–3.626) | .703 | ||
| Nonlocal | 17 | 11 (64.7) | 1 | |||
| Occupation | ||||||
| Housekeeping, housework and job hunting | 30 | 14 (46.7) | 3.571 (1.223–10.429) | .020 | 3.018 (0.810–11.239) | .100 |
| Worker | 10 | 4 (40.4) | 4.687 (1.051–20.899) | .043 | 7.154 (1.057–48.417) | |
| Business waiter | 7 | 2 (28.6) | 7.812 (1.262–48.356) | .027 | 8.778 (0.898–85.767) | .062 |
| Cadre staff | 10 | 7 (70.0) | 1.339 (0.279–6.434) | .715 | 1.156 (0.185–7.214) | .877 |
| Retired | 10 | 8 (80.0) | 0.781 (0.137–4.460) | .781 | 0.617 (0.068–5.594) | .668 |
| Farmer | 9 | 6 (66.7) | 1.562 (0.316–7.726) | .584 | 3.228 (0.430–24.252) | .255 |
| Other and unknown | 33 | 25 (75.8) | 1 | 1 | ||
| Route of infection | ||||||
| Same-sex transmission | 83 | 51 (61.4) | 0.856 (0.350–2.094) | .733 | ||
| Heterosexual transmission | 26 | 15 (57.7) | 1 | |||
| Sample source | ||||||
| Testing Consulting | 32 | 14 (43.8) | 7.071 (1.978–25.278) | .003 | 6.984 (1.476–33.043) | |
| STD clinic | twenty two | 14 (63.6) | 3.143 (0.795–12.425) | .103 | 2.138 (0.415–11.014) | .364 |
| Other visitor tests | 29 | 16 (55.2) | 4.469 (1.227–16.275) | .023 | 6.088 (1.316–28.151) | |
| Other sources | 26 | 22 (84.6) | 1 | 1 | ||
| HIV genotype | ||||||
| CRF01_AE | 83 | 57 (68.7) | 1 | 1 | ||
| B | 11 | 4 (36.4) | 3.837 (1.032–14.263) | .045 | 7.142 (1.356–37.621) | |
| CRF07_BC | 8 | 5 (62.5)) | 1.315 (0.292–5.923) | .721 | 2.093 (0.369–11.869) | .404 |
| Others | 7 | 0 (0.0) | — | — | — | — |
| Whether HIV is resistant | ||||||
| Resistance | 15 | 3 (20.0) | 8.129 (2.137–30.928) | 0.002 | 7.184 (1.286–40.121) | |
| Not resistant | 94 | 63 (67.0) | 1 | 1 | ||
Characteristics of HIV infectors/AIDS patients within molecular transmission clusters.
| Serial Number | Cases | HIV-1 subtype | Gene distance within transmission cluster | Pathway of infection (n) | Location of address (n) |
| 1 | 40 | CRF01_AE | 0.010 ± 0.001 | Homosexual transmission (27); Heterosexual transmission (13) | Heping District, Shenyang (12); Shenhe District, Shenyang (3); Dadong District, Shenyang (7); Huanggu District, Shenyang (9); Tiexi District, Shenyang (6); Yuhong District, Shenyang (2); Shuangtaizi District, Panjin (1) |
| 2 | 9 | CRF01_AE | 0.012 ± 0.002 | Homosexual transmission (9) | Heping District, Shenyang (1); Dadong District, Shenyang (4); Huanggu District, Shenyang (2); Shenbei New District, Shenyang (1); Hunnan District, Shenyang (1) |
| 3 | 5 | CRF07_BC | 0.006 ± 0.002 | Homosexual transmission (5) | Huanggu District, Shenyang (1); Tiexi District, Shenyang (2); Yuhong District, Shenyang (1); Dawa District, Panjin (1) |
| 4 | 3 | CRF01_AE | 0.005 ± 0.002 | Homosexual transmission (2); Heterosexual transmission (1) | Shuangtaizi District, Panjin (2); Panshan Town, Panjin (1) |
| 5 | 2 | B | 0.004 ± 0.002 | Homosexual transmission (2) | Heping District, Shenyang (1); Huanggu District, Shenyang (1) |
| 6 | 2 | B | 0.005 ± 0.002 | Homosexual transmission (2) | Dadong District, Shenyang (1); Shuangtaizi District, Panjin (1) |
| 7 | 2 | CRF01_AE | 0.004 ± 0.002 | Homosexual transmission (2) | Xingcheng City, Huludao (2) |
| 8 | 2 | CRF01_AE | 0.001 ± 0.001 | Homosexual transmission (2) | Heping District, Shenyang (1); Shenbei New District, Shenyang (1) |
| 9 | 1 | CRF01_AE | / | Homosexual transmission (1) | Tiexi District, Shenyang (1) |