| Literature DB >> 34258471 |
Sayaka Miyai1,2, Amin Omar Hendawy2,3, Kan Sato2,4.
Abstract
BACKGROUND: Molecular mechanisms and early diagnosis on the development of mild to moderate of canine obesity are not understood although recent dog obesity is a widespread problem. To understand the differences between normal weight and mild to moderate obesity, the purpose of this study is to investigate the gene expression profiles of peripheral blood mononuclear cells (PBMC) in dogs.Entities:
Keywords: Biomarker; Hemoglobin subunits; Obesity; PBMC; Transcriptomes
Year: 2021 PMID: 34258471 PMCID: PMC8251507 DOI: 10.1016/j.vas.2021.100183
Source DB: PubMed Journal: Vet Anim Sci ISSN: 2451-943X
Fig. 1The workflow from RNA isolation to functional annotation of genes.
Fig. 2BW and BCS in the obese and control groups. Data are represented means±standard error (SE), n = 6, *p < 0.05.
Forward and reverse primers used for RT-PCR.
| F | CAACTCGACAAAAGCGTTCA | 174 | 475881 | |
| R | CACATAAGGCGACAGCTTCA | |||
| F | TTGGCTTGCATATGTTGTTTGTG | 248 | 611565 | |
| R | CACAGATGACCTGGGCAGTAAGT | |||
| F | AGTTCCTCAGGAGAGCAAAGGAA | 151 | 478421 | |
| R | CATCATCTGAGGATCAACCTTGG | |||
| F | AGTTCCTCAGGAGAGCAAAGGAA | 151 | 606767 | |
| R | CATCATCTGAGGATCAACCTTGG | |||
| F | ACTTCAAGCTCCTGAGCCACTG | 142 | 1.01E+08 | |
| R | GCAGCTTAACGGTACTTGGAGGT | |||
| F | CAGAGAAGGTCACACACCTGGTT | 216 | 491498 | |
| R | CATTACTGCACCAGACTGACACG | |||
| F | ATGCAACTGTGACCAAGGACATT | 120 | 482840 | |
| R | TACACTGTGTGATGGCTCAGCTC | |||
| F | TTCAATCCCAGTGGAAGGAATTT | 194 | 476775 | |
| R | AGGTGGCACAACATCTGAAACAT | |||
| F | ATTGGAATGACCAAGATCCCTGT | 231 | 484147 | |
| R | GTCACTGGCATCCTTCAGTGTCT | |||
Serum levels of glucose metabolism (GLU and Insulin), lipid metabolism (TG and T-cho), liver function markers (AST and ALT), inflammation marker (CRP) and adipokine (Leptin) in the obese and control groups.
| GLU (mg/dL) | 97.8 ± 4.18 | 92.7 ± 6.11 |
| Insulin (mU/L) | 7.05 ± 1.36 | 14.5 ± 2.96* |
| TG (mg/dL) | 58.8 ± 4.22 | 102 ± 16.2* |
| T-cho (mg/dL) | 148 ± 8.01 | 196 ± 23.8 |
| AST (U/L) | 31.3 ± 1.98 | 28.7 ± 2.11 |
| ALT(U/L) | 47.0 ± 3.89 | 43.8 ± 10.0 |
| CRP (mg/dL) | 0.92 ± 0.08 | 1.08 ± 0.19 |
| Leptin (ng/mL) | 2.47 ± 1.08 | 7.25 ± 2.26 |
Data are represented by means ± standard error (SE), (n = 6), *p < 0.05.
GLU: glucose, TG: triglyceride, T-cho: total cholesterol, AST: aspartate transaminase, ALT: alanine transaminase, CRP: C-reactive protein
Fig. 3Differential expression of genes in obese and control groups. (A) Heatmap of PBMC differential gene expression profiles in obese and control groups. The level of expression of each gene in each sample relative to the median level of expression of that gene across all samples is represented using a red, black and green color scale (green-below median; black-equal to median; red-above median). (B) The KEGG pathway and associated gene using David analysis in downregulated genes in the obese group.
Upregulated genes (n = 4) and downregulated genes (n = 5) in the obese group compared with the control group in RNA-seq.
| 5.1 | −25 | ||
| 4.4 | −5.9 | ||
| 4.2 | −5.6 | ||
| 8.2 | −4.9 | ||
| −4.3 | |||
These genes were selected based on FDR < 5%, P values < 0.05 and > 3.5-fold change.
NDUFV3 encodes a NADH dehydrogenase [ubiquinone] flavoprotein 3, LOC611565 encodes antigen WC1.1-like, BCL2L15 encodes a BCL2 family kin (Bfk) isoform b, NRCAM encodes a neuronal cell adhesion molecule, FOLH1 encodes a folate hydrolase 1, LOC100855540 encodes a globin domain-containing protein, ALAS2 encodes a 5′-Aminolevulinate Synthase 2, NTRK2 encodes a neurotrophic receptor tyrosine kinase 2, PLAT encodes a tissue-type plasminogen activator. LOC100855540 and ALAS2 are genes which related to hemoglobin.
Fig. 4Validation of RNA-seq upregulated genes by real-time RT-PCR. Data are represented by means ± standard error (SE), (n = 6), *p < 0.05 **p < 0.01. □: control group, ■: obese group. Results were normalized with RSP9 (40S ribosomal protein S9).
Fig. 5Validation of RNA-seq downregulated genes by real-time RT-PCR. Data are represented by means ± standard error (SE), (n = 6), *p < 0.05 **p < 0.01. □: control group, ■: obese group. Results were normalized with RSP9 (40S ribosomal protein S9).