Literature DB >> 34255144

Residues surrounding the active centre of carbon monoxide dehydrogenase are key in converting [Formula: see text] to CO.

Umberto Terranova1.   

Abstract

The enzyme carbon monoxide dehydrogenase is capable of efficiently converting [Formula: see text] to CO and, therefore, can enable an affordable [Formula: see text] recycling strategy. The reduction of [Formula: see text] occurs at a peculiar nickel-iron-sulfur cluster, following a mechanism that remains little understood. In this study, we have used ab initio molecular dynamics simulations to explore the free energy landscape of the reaction. We predict the existence of a COOH ligand that strongly interacts with the surrounding protein residues and favours a mechanism where a [Formula: see text] molecule is eliminated before CO. We have taken advantages of the insights offered by our simulations to revisit the catalytic mechanism and the role of the residues surrounding the active centre in particular, thus assisting in the design of inorganic catalysts that mimic the enzyme.
© 2021. Society for Biological Inorganic Chemistry (SBIC).

Entities:  

Year:  2021        PMID: 34255144     DOI: 10.1007/s00775-021-01878-4

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  36 in total

1.  Highly selective electrocatalytic conversion of CO2 to CO at -0.57 V (NHE) by carbon monoxide dehydrogenase from Moorella thermoacetica.

Authors:  Woonsup Shin; Sang Hee Lee; Jun Won Shin; Sang Phil Lee; Yousung Kim
Journal:  J Am Chem Soc       Date:  2003-12-03       Impact factor: 15.419

Review 2.  Frontiers, opportunities, and challenges in biochemical and chemical catalysis of CO2 fixation.

Authors:  Aaron M Appel; John E Bercaw; Andrew B Bocarsly; Holger Dobbek; Daniel L DuBois; Michel Dupuis; James G Ferry; Etsuko Fujita; Russ Hille; Paul J A Kenis; Cheryl A Kerfeld; Robert H Morris; Charles H F Peden; Archie R Portis; Stephen W Ragsdale; Thomas B Rauchfuss; Joost N H Reek; Lance C Seefeldt; Rudolf K Thauer; Grover L Waldrop
Journal:  Chem Rev       Date:  2013-06-14       Impact factor: 60.622

3.  Life on carbon monoxide: X-ray structure of Rhodospirillum rubrum Ni-Fe-S carbon monoxide dehydrogenase.

Authors:  C L Drennan; J Heo; M D Sintchak; E Schreiter; P W Ludden
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-02       Impact factor: 11.205

4.  Crystal structure of a carbon monoxide dehydrogenase reveals a [Ni-4Fe-5S] cluster.

Authors:  H Dobbek; V Svetlitchnyi; L Gremer; R Huber; O Meyer
Journal:  Science       Date:  2001-08-17       Impact factor: 47.728

5.  Recent advances in catalytic hydrogenation of carbon dioxide.

Authors:  Wei Wang; Shengping Wang; Xinbin Ma; Jinlong Gong
Journal:  Chem Soc Rev       Date:  2011-04-20       Impact factor: 54.564

6.  Carbon monoxide induced decomposition of the active site [Ni-4Fe-5S] cluster of CO dehydrogenase.

Authors:  Holger Dobbek; Vitali Svetlitchnyi; Jago Liss; Ortwin Meyer
Journal:  J Am Chem Soc       Date:  2004-05-05       Impact factor: 15.419

7.  Structural basis of cyanide inhibition of Ni, Fe-containing carbon monoxide dehydrogenase.

Authors:  Jae-Hun Jeoung; Holger Dobbek
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

8.  Carbon dioxide activation at the Ni,Fe-cluster of anaerobic carbon monoxide dehydrogenase.

Authors:  Jae-Hun Jeoung; Holger Dobbek
Journal:  Science       Date:  2007-11-30       Impact factor: 47.728

9.  Rapid and efficient electrocatalytic CO2/CO interconversions by Carboxydothermus hydrogenoformans CO dehydrogenase I on an electrode.

Authors:  Alison Parkin; Javier Seravalli; Kylie A Vincent; Stephen W Ragsdale; Fraser A Armstrong
Journal:  J Am Chem Soc       Date:  2007-08-02       Impact factor: 15.419

Review 10.  Structure, function, and mechanism of the nickel metalloenzymes, CO dehydrogenase, and acetyl-CoA synthase.

Authors:  Mehmet Can; Fraser A Armstrong; Stephen W Ragsdale
Journal:  Chem Rev       Date:  2014-02-13       Impact factor: 60.622

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