Literature DB >> 34253897

ALKBH7-mediated demethylation regulates mitochondrial polycistronic RNA processing.

Li-Sheng Zhang1,2, Qing-Ping Xiong3, Sonia Peña Perez4,5, Chang Liu1,2, Jiangbo Wei1,2, Cassy Le4, Linda Zhang1,2, Bryan T Harada1,2, Qing Dai1,2, Xinran Feng1,2, Ziyang Hao1,2, Yuru Wang6, Xueyang Dong1,2, Lulu Hu1,2, En-Duo Wang3,7, Tao Pan6, Arne Klungland4,5, Ru-Juan Liu8,9, Chuan He10,11,12.   

Abstract

Members of the mammalian AlkB family are known to mediate nucleic acid demethylation1,2. ALKBH7, a mammalian AlkB homologue, localizes in mitochondria and affects metabolism3, but its function and mechanism of action are unknown. Here we report an approach to site-specifically detect N1-methyladenosine (m1A), N3-methylcytidine (m3C), N1-methylguanosine (m1G) and N2,N2-dimethylguanosine (m22G) modifications simultaneously within all cellular RNAs, and discovered that human ALKBH7 demethylates m22G and m1A within mitochondrial Ile and Leu1 pre-tRNA regions, respectively, in nascent polycistronic mitochondrial RNA4-6. We further show that ALKBH7 regulates the processing and structural dynamics of polycistronic mitochondrial RNAs. Depletion of ALKBH7 leads to increased polycistronic mitochondrial RNA processing, reduced steady-state mitochondria-encoded tRNA levels and protein translation, and notably decreased mitochondrial activity. Thus, we identify ALKBH7 as an RNA demethylase that controls nascent mitochondrial RNA processing and mitochondrial activity.
© 2021. The Author(s), under exclusive licence to Springer Nature Limited.

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Year:  2021        PMID: 34253897      PMCID: PMC8716185          DOI: 10.1038/s41556-021-00709-7

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.213


  39 in total

1.  AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli.

Authors:  Pål Ø Falnes; Rune F Johansen; Erling Seeberg
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

2.  FTO Plays an Oncogenic Role in Acute Myeloid Leukemia as a N6-Methyladenosine RNA Demethylase.

Authors:  Zejuan Li; Hengyou Weng; Rui Su; Xiaocheng Weng; Zhixiang Zuo; Chenying Li; Huilin Huang; Sigrid Nachtergaele; Lei Dong; Chao Hu; Xi Qin; Lichun Tang; Yungui Wang; Gia-Ming Hong; Hao Huang; Xiao Wang; Ping Chen; Sandeep Gurbuxani; Stephen Arnovitz; Yuanyuan Li; Shenglai Li; Jennifer Strong; Mary Beth Neilly; Richard A Larson; Xi Jiang; Pumin Zhang; Jie Jin; Chuan He; Jianjun Chen
Journal:  Cancer Cell       Date:  2016-12-22       Impact factor: 31.743

3.  Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA.

Authors:  Per Arne Aas; Marit Otterlei; Pål O Falnes; Cathrine B Vågbø; Frank Skorpen; Mansour Akbari; Ottar Sundheim; Magnar Bjørås; Geir Slupphaug; Erling Seeberg; Hans E Krokan
Journal:  Nature       Date:  2003-02-20       Impact factor: 49.962

4.  Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage.

Authors:  Sarah C Trewick; Timothy F Henshaw; Robert P Hausinger; Tomas Lindahl; Barbara Sedgwick
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

5.  Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA.

Authors:  Cai-Guang Yang; Chengqi Yi; Erica M Duguid; Christopher T Sullivan; Xing Jian; Phoebe A Rice; Chuan He
Journal:  Nature       Date:  2008-04-24       Impact factor: 49.962

6.  ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility.

Authors:  Guanqun Zheng; John Arne Dahl; Yamei Niu; Peter Fedorcsak; Chun-Min Huang; Charles J Li; Cathrine B Vågbø; Yue Shi; Wen-Ling Wang; Shu-Hui Song; Zhike Lu; Ralph P G Bosmans; Qing Dai; Ya-Juan Hao; Xin Yang; Wen-Ming Zhao; Wei-Min Tong; Xiu-Jie Wang; Florian Bogdan; Kari Furu; Ye Fu; Guifang Jia; Xu Zhao; Jun Liu; Hans E Krokan; Arne Klungland; Yun-Gui Yang; Chuan He
Journal:  Mol Cell       Date:  2012-11-21       Impact factor: 17.970

7.  Deletion of mouse Alkbh7 leads to obesity.

Authors:  Anja Solberg; Adam B Robertson; Jan Magnus Aronsen; Øivind Rognmo; Ivar Sjaastad; Ulrik Wisløff; Arne Klungland
Journal:  J Mol Cell Biol       Date:  2013-04-08       Impact factor: 6.216

8.  N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO.

Authors:  Guifang Jia; Ye Fu; Xu Zhao; Qing Dai; Guanqun Zheng; Ying Yang; Chengqi Yi; Tomas Lindahl; Tao Pan; Yun-Gui Yang; Chuan He
Journal:  Nat Chem Biol       Date:  2011-10-16       Impact factor: 15.040

9.  A complete landscape of post-transcriptional modifications in mammalian mitochondrial tRNAs.

Authors:  Takeo Suzuki; Tsutomu Suzuki
Journal:  Nucleic Acids Res       Date:  2014-05-15       Impact factor: 16.971

10.  R-2HG Exhibits Anti-tumor Activity by Targeting FTO/m6A/MYC/CEBPA Signaling.

Authors:  Rui Su; Lei Dong; Chenying Li; Sigrid Nachtergaele; Mark Wunderlich; Ying Qing; Xiaolan Deng; Yungui Wang; Xiaocheng Weng; Chao Hu; Mengxia Yu; Jennifer Skibbe; Qing Dai; Dongling Zou; Tong Wu; Kangkang Yu; Hengyou Weng; Huilin Huang; Kyle Ferchen; Xi Qin; Bin Zhang; Jun Qi; Atsuo T Sasaki; David R Plas; James E Bradner; Minjie Wei; Guido Marcucci; Xi Jiang; James C Mulloy; Jie Jin; Chuan He; Jianjun Chen
Journal:  Cell       Date:  2017-12-14       Impact factor: 66.850

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  4 in total

Review 1.  tRNA modification dynamics from individual organisms to metaepitranscriptomics of microbiomes.

Authors:  Wen Zhang; Marcus Foo; A Murat Eren; Tao Pan
Journal:  Mol Cell       Date:  2022-01-14       Impact factor: 17.970

Review 2.  m1A RNA Modification in Gene Expression Regulation.

Authors:  Hao Jin; Chunxiao Huo; Tianhua Zhou; Shanshan Xie
Journal:  Genes (Basel)       Date:  2022-05-19       Impact factor: 4.141

Review 3.  Protein methylation in mitochondria.

Authors:  Jędrzej M Małecki; Erna Davydova; Pål Ø Falnes
Journal:  J Biol Chem       Date:  2022-03-03       Impact factor: 5.157

Review 4.  RNA modifications: importance in immune cell biology and related diseases.

Authors:  Lian Cui; Rui Ma; Jiangluyi Cai; Chunyuan Guo; Zeyu Chen; Lingling Yao; Yuanyuan Wang; Rui Fan; Xin Wang; Yuling Shi
Journal:  Signal Transduct Target Ther       Date:  2022-09-22
  4 in total

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