| Literature DB >> 34253887 |
Oxana Kazakova1, Elena Tret'yakova2, Dmitry Baev3.
Abstract
A series of semisynthetic triterpenoids with A-ring azepano- and A-seco-fragments as well as hydrazido/hydrazono-substituents at C3 and C28 has been synthesized and evaluated for antimicrobial activity against key ESKAPE pathogens and DNA viruses (HSV-1, HCMV, HPV-11). It was found that azepanouvaol 8, 3-amino-3,4-seco-4(23)-en derivatives of uvaol 21 and glycyrrhetol-dien 22 as well as azepano-glycyrrhetol-tosylate 32 showed strong antimicrobial activities against MRSA with MIC ≤ 0.15 μM that exceeds the effect of antibiotic vancomycin. Azepanobetulinic acid cyclohexyl amide 4 exhibited significant bacteriostatic effect against MRSA (MIC ≤ 0.15 μM) with low cytotoxicity to HEK-293 even at a maximum tested concentration of >20 μM (selectivity index SI 133) and may be considered a noncytotoxic anti-MRSA agent. Azepanobetulin 1, azepanouvaol 8, and azepano-glycyrrhetol 15 showed high potency towards HCMV (EC50 0.15; 0.11; 0.11 µM) with selectivity indexes SI50 115; 136; 172, respectively. The docking studies suggest the possible interactions of the leading compounds with the molecular targets.Entities:
Mesh:
Substances:
Year: 2021 PMID: 34253887 PMCID: PMC8273037 DOI: 10.1038/s41429-021-00448-9
Source DB: PubMed Journal: J Antibiot (Tokyo) ISSN: 0021-8820 Impact factor: 2.649
Fig. 1Azepano-, hydrazido/hydrazono-, and seco-triterpenic derivatives: azepanobetulin 1, tosylate 2, acetohydrazide 3, amides 4–7, 9, azepanouvaol 8, azepanoallobetulin 10, abeo-lupanes 11 and 12, azepanomessagenin 13, azepanoerythrodiol 14, azepano-glycyrrhetinic 15 and 16, hydrazones 17, 19, 20, hydrazide 18, 3-amino-3,4-seco-4(23)-en triterpenic derivatives of uvaol 21, and glycyrrhetol-dien 22
Scheme 1Synthesis of compounds 24, 26, 29–34, 36, 37. Reagents and conditions: a (1) (COCl)2, CH2Cl2, 22 °С, 3 h; (2) imidazole, DMAP, CH2Cl2, reflux, 3 h; (3) LiAlH4, THF, reflux, 1 h; b (1) (COCl)2, CH2Cl2, 22 °С, 3 h; (2) 4-pyridinoylhidrazide, CH2Cl2, reflux, 3 h; (3) LiAlH4, THF, reflux, 1 h; c (1) (COCl)2, CH2Cl2, 22 °С, 3 h; (2) 4-pyridinoylhidrazide for compounds 29, 30 and 3-pyridinoylhidrazide for compound 31, CH2Cl2, reflux, 3 h; d p-TsCl, pyridine, DMAP, 48 h, 22 °C; e PCC, CH2Cl2, rt, 30 min; f 4-pyridinoylhidrazide, MeOH, 22 °C, 8 h. g 3-pyridinoylhidrazide, MeOH, 22 °C, 6 h
Percentage antibacterial and antifungal growth inhibition of compounds 1–4, 8–22, 26, 29–32, 34, 36, and 37 at concentration 20 μMa
| Compound | Gram-positive bacteria | Gram-negative bacteria | Fungi | ||||
|---|---|---|---|---|---|---|---|
| −0.25 | 7.50 | 23.35 | 20.01 | 8.38 | |||
| 9.61 | 3.96 | −0.92 | 17.53 | ||||
| 47.83 | −4.72 | 4.78 | −3.74 | 28.31 | 11.74 | ||
| 16.13 | 13.10 | −4.37 | 23.25 | ||||
| 15.15 | −1.29 | 23.40 | 32.17 | 18.07 | |||
| −6.12 | 19.57 | −8.27 | 45.49 | ||||
| −1.37 | −15.47 | 5.25 | 12.84 | ||||
| 0.85 | 1.07 | 5.04 | 16.18 | ||||
| 1.92 | −8.12 | −0.30 | 16.58 | ||||
| 2.59 | 6.61 | 18.49 | 7.65 | 12.53 | −6.14 | ||
| 21.81 | 18.85 | 13.01 | 33.54 | ||||
| 7.17 | 14.41 | 25.39 | 34.72 | ||||
| 1.64 | 1.86 | 14.57 | 41.07 | ||||
| 9.62 | −3.99 | 5.25 | −6.21 | 19.13 | 17.50 | −12.79 | |
| 18.34 | −1.26 | 2.91 | 3.81 | 39.78 | 62.06 | 1.53 | |
| 9.06 | −0.71 | 12.60 | 8.48 | 34.89 | 4.77 | −3.32 | |
| 0.19 | −3.33 | −0.30 | 3.96 | 37.10 | 7.47 | −2.81 | |
| 19.03 | 6.36 | 10.65 | 29.64 | 21.82 | |||
| 23.74 | 24.29 | 9.90 | 36.00 | ||||
| 6.66 | 1.45 | 12.58 | 6.19 | 15.42 | 7.32 | −1.15 | |
| −4.12 | −4.64 | −4.92 | 3.81 | 0.87 | 7.53 | −11.51 | |
| 14.72 | 0.30 | 3.19 | 1.55 | 10.69 | 10.53 | −8.72 | |
| −5.16 | −1.34 | −9.72 | 7.12 | −6.61 | 15.45 | 17.65 | |
| 2.89 | 9.14 | 0.87 | 13.08 | ||||
| 0.01 | −12.00 | 12.77 | 21.96 | ||||
| 14.78 | 3.08 | 10.74 | 16.58 | 13.81 | 8.44 | 1.52 | |
| −10.09 | −3.06 | −6.88 | 8.30 | 7.18 | 9.58 | 17.65 | |
aHighest percentile of antibacterial/antifungal growth inhibition is highlighted in bold
Antibacterial activity (MIC, μΜ (SI)) for the compounds 1–4, 8–16, 21, 22, 20, and 34
| Compound | Gram-positive bacteria | Gram-negative bacteria | Fungi | Mammalian cells | |||||
|---|---|---|---|---|---|---|---|---|---|
| HEK-293 (CC50)a | |||||||||
| >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 | ||
| 1.25 (0.1) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | ≤0.15 (<0.83) | >20 (<0.01) | ≤0.125 | ||
| >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 | ||
| ≤0.15 (133) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 | ||
| ≤0.15 (1.51) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | 0.227 | ||
| 5 (1.49) | >20 (<0.37) | >20 (<0.37) | >20 (<0.37) | >20 (<0.37) | >20 (<0.37) | >20 (<0.37) | 7.493 | ||
| 5 (0.65) | >20 (<0.16) | >20 (<0.16) | >20 (<0.16) | >20 (<0.16) | 10 (<0.32) | >20 (<0.16) | 3.228 | ||
| >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 | ||
| 2.50 (0.05) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | ≤0.15 (<0.83) | >20 (<0.01) | ≤0.125 | ||
| >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 | ||
| 1.25 (1.07) | >20 (<0.07) | >20 (<0.07) | >20 (<0.07) | >20 (<0.07) | >20 (<0.07) | >20 (<0.07) | 1.335 | ||
| 2.50 (4.36) | >20 (<0.5) | >20 (<0.5) | >20 (<0.5) | >20 (<0.5) | >20 (<0.5) | 10 (1.1) | 10.90 | ||
| 10 (<2) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 | ||
| ≤0.15 (0.83) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | 10 (<0.01) | ≤0.125 | ||
| ≤0.15 (0.83) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | 1.25 (<0.1) | 20 (<0.01) | ≤0.125 | ||
| ≤0.15 (1.16) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | >20 (<0.01) | 0.174 | ||
| >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20 (<1) | >20(<1) | >20 (<1) | >20 (<1) | ||
| – | 0.08 | 0.15 | 0.15 | 0.15 | – | − | – | ||
| 0.625 | – | – | – | – | – | – | – | ||
| – | – | – | – | – | 0.08 | 5 | – | ||
| – | – | – | – | – | – | – | 5.625 | ||
aCC50 (concentration at 50% cytotoxicity)
SI selectivity index (CC50/MIC)
In vitro antiviral activity of compounds 1, 2, 5–8, 10, 12, 14–16, and 24
| Compound (ARB no.) | EC50 | EC90 | CC50 | SI50 | SI90 |
|---|---|---|---|---|---|
| >6 | >6 | 25.67 | <4 | <4 | |
| >1.20 | >1.20 | 3.22 | <3 | <3 | |
| >6 | >6 | 7.87 | <1 | <1 | |
| >1.20 | >1.20 | 2.78 | <2 | <2 | |
| >6 | >6 | 10.63 | <2 | <2 | |
| 0.83 | >150 | >150 | >181 | 1 | |
| >6 | >6 | 12.76 | <2 | <2 | |
| >6 | >6 | 14.91 | <2 | <2 | |
| >6 | >6 | 6.14 | <1 | <1 | |
| 0.87 | >150 | >150 | >172 | 1 | |
| 0.15 | >6 | 17.20 | 115 | <3 | |
| >1.20 | >1.20 | 3.24 | <3 | <3 | |
| 0.11 | >6 | 14.79 | 136 | <2 | |
| >1.20 | >1.20 | 3.49 | <3 | <3 | |
| 0.11 | >6 | 18.58 | 172 | <3 | |
| 0.24 | 1.08 | >150 | >625 | >139 | |
| >1.20 | >1.20 | 4.08 | <3 | <3 | |
| >6 | >6 | 15.32 | <3 | <3 | |
| >0.24 | >0.24 | 1.18 | <5 | <5 | |
| 0.80 | >150 | >150 | >187 | 1 | |
| >1.20 | >1.20 | 3.81 | <3 | <3 | |
| >30 | >30 | 86.48 | <3 | <3 | |
| >30 | >30 | 89.45 | <3 | <3 | |
| >30 | >30 | 80.86 | <3 | <3 | |
| 1.11 | >150 | >150 | >135 | 1 | |
| >6 | >6 | 18.71 | <3 | <3 | |
| >6 | >6 | 16.14 | <3 | <3 | |
| >6 | >6 | 17.56 | <3 | <3 | |
| >150 | >150 | >150 | 1 | 1 | |
| 0.92 | >30 | 110.24 | 120 | <4 | |
| >6 | >6 | 11.89 | <2 | <2 | |
| >1.20 | >1.20 | 5.16 | <4 | <4 | |
| >0.24 | >0.24 | 0.78 | <3 | <3 | |
| >1.20 | >1.20 | 3.32 | <3 | <3 | |
| >1.20 | >1.20 | 4.79 | <4 | <4 | |
| >0.24 | >0.24 | 0.78 | <3 | <3 | |
| >1.20 | >1.20 | 1.34 | <1 | <1 | |
| 1.07 | >1.20 | 2.83 | 3 | >2 | |
| 0.68 | 100.62 | >150 | >221 | >1 | |
EC50—compound concentration that reduced viral replication by 50%; EC90—compound concentration that reduced viral replication by 90%; CC50—compound concentration that reduced cell viability by 50%; SI50—selectivity index (CC50/EC50)
aVirus strain: E-377; cell line: HFF; vehicle: DMSO; drug conc. range: 0.048–150 μM; control conc. range: 0.048–150 μM; experiment number: 17-hsv1-033 for 1, 6, 8, 14, 15; 17-hsv1-034 for 5, 12, 24; control assay order: primary; control assay name: CellTiter-Glo (cytopathic effect/toxicity)
bVirus strain: AD169; cell line: HFF; vehicle: DMSO; drug conc. range: 0.048–150 μM; control conc. range: 0.048–150 μM; experiment number: 17-hcmv-028 for 1, 6, 8, 14, 15; 17-hcmv-029 for 5, 12, 24; 18-hcmv-009 for 2, 7, 10, 16; control assay order: primary; control assay name: CellTiter-Glo (cytopathic effect/toxicity)
cVirus strain: GDGr K17 (resistant isolate); cell line: HFF; vehicle: DMSO; drug conc. range: 0.01–30 μM; control conc. range: 0.048–150 μM; experiment number: 17-hcmvR-041 for 1, 8, 15; control assay order: primary; control assay name: CellTiter-Glo (cytopathic effect/toxicity)
dVirus strain: HE611260.1; cell line: C-33 A; vehicle: DMSO; drug conc. range: 0.048–150 μM; control conc. range: 0.048–150 μM; experiment number: 17-hpv11-013; control assay name: Nano-Glo Luciferase (Nanoluc)/CellTiter-Glo (toxicity)
Fig. 2a Docking of compound 4 (−3.413 kcal/mol) in S. aureus topoisomerase IV. Hydrogen bonds are shown by dashed green lines, hydrophobic interactions are omitted. b Superposition of the structures of compound 4 (yellow) and novobiocin (gray) at the topoisomerase binding site
Fig. 3Docking of compounds 1, 8 and 15 in KSHV protease asymmetric monomers binding sites (monomer A (a, c, e, g); monomer B (b, d, f, h). a (−4.004 kcal/mol), b (−8.137 kcal/mol)—dimer disruptor; c, d compound 1; e, f compound 8; g, h compound 15. Noncovalent interactions of molecules are shown by dotted lines: green—hydrogen bonds, purple—stacking and pi-sigma interactions, pink—hydrophobic interactions
KSHV protease asymmetric monomers docking results
| Binding energya, kcal/mol | ||
|---|---|---|
| Ligand | Monomer A | Monomer B |
| Dimer disruptor (4P3H) | −4.004 | −8.137 |
| −5.350 | −7.244 | |
| −4.491 | −5.185 | |
| −4.372 | −5.641 | |
aValue is not genuine binding energy but estimated docking score