Literature DB >> 34251194

Q-Force: Quantum Mechanically Augmented Molecular Force Fields.

Selim Sami1,2, Maximilian F S J Menger2, Shirin Faraji2, Ria Broer2, Remco W A Havenith1,2,3.   

Abstract

The quality of molecular dynamics simulations strongly depends on the accuracy of the underlying force fields (FFs) that determine all intra- and intermolecular interactions of the system. Commonly, transferable FF parameters are determined based on a representative set of small molecules. However, such an approach sacrifices accuracy in favor of generality. In this work, an open-source and automated toolkit named Q-Force is presented, which augments these transferable FFs with molecule-specific bonded parameters and atomic charges that are derived from quantum mechanical (QM) calculations. The molecular fragmentation procedure allows treatment of large molecules (>200 atoms) with a low computational cost. The generated Q-Force FFs can be used at the same computational cost as transferable FFs, but with improved accuracy: We demonstrate this for the vibrational properties on a set of small molecules and for the potential energy surface on a complex molecule (186 atoms) with photovoltaic applications. Overall, the accuracy, user-friendliness, and minimal computational overhead of the Q-Force protocol make it widely applicable for atomistic molecular dynamics simulations.

Entities:  

Year:  2021        PMID: 34251194     DOI: 10.1021/acs.jctc.1c00195

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  2 in total

1.  Fullerene derivatives with oligoethylene-glycol side chains: an investigation on the origin of their outstanding transport properties.

Authors:  Jingjin Dong; Selim Sami; Daniel M Balazs; Riccardo Alessandri; Fatimeh Jahani; Li Qiu; Siewert J Marrink; Remco W A Havenith; Jan C Hummelen; Maria A Loi; Giuseppe Portale
Journal:  J Mater Chem C Mater       Date:  2021-08-18       Impact factor: 7.393

2.  Modelling structural properties of cyanine dye nanotubes at coarse-grained level.

Authors:  Ilias Patmanidis; Paulo C T Souza; Selim Sami; Remco W A Havenith; Alex H de Vries; Siewert J Marrink
Journal:  Nanoscale Adv       Date:  2022-06-20
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.