Literature DB >> 34247324

RSCMDA: Prediction of Potential miRNA-Disease Associations Based on a Robust Similarity Constraint Learning Method.

Yu ShengPeng1, Wang Hong2.   

Abstract

With the rapid development of biotechnology and computer technology, increasing studies have shown that the occurrence of many diseases in the human body is closely related to the dysfunction of miRNA, and the relationship between them has become a new research hotspot. Exploring disease-related miRNAs information provides a new perspective for understanding the etiology and pathogenesis of diseases. In this study, we proposed a new method based on similarity constrained learning (RSCMDA) to infer disease-associated miRNAs. Considering the problems of noise and incomplete information in current biological datasets, we designed a new framework RSCMDA, which can learn a new disease similarity network and miRNA similarity network based on the existing biological information, and then update the predicted miRNA-disease associations using robust similarity constraint learning method. Consequently, the AUC scores obtained in the global and local cross-validation of RSCMDA are 0.9465 and 0.8494, respectively, which are superior to the other methods. Besides, the prediction performance of RSCMDA is further confirmed by the case study on lung Neoplasms, because 94% of the top 50 miRNAs predicted by the RSCMDA method are confirmed from the existing biological databases or research results. All the results show that RSCMDA is a reliable and effective framework, which can be used as new technology to explore the relationship between miRNA and disease.
© 2021. International Association of Scientists in the Interdisciplinary Areas.

Entities:  

Keywords:  AUC; Disease; Lung neoplasms; Similarity constrained learning; miRNA

Year:  2021        PMID: 34247324     DOI: 10.1007/s12539-021-00459-y

Source DB:  PubMed          Journal:  Interdiscip Sci        ISSN: 1867-1462            Impact factor:   2.233


  40 in total

1.  Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA.

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Journal:  Cell       Date:  1993-12-03       Impact factor: 41.582

5.  The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14.

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Authors:  Shudong Wang; Dayan Liu; Mao Ding; Zhenzhen Du; Yue Zhong; Tao Song; Jinfu Zhu; Renteng Zhao
Journal:  Front Genet       Date:  2021-02-19       Impact factor: 4.599

9.  Protein-driven inference of miRNA-disease associations.

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Journal:  Bioinformatics       Date:  2013-11-21       Impact factor: 6.937

10.  MicroRNA-155 acts as a tumor suppressor in colorectal cancer by targeting CTHRC1 in vitro.

Authors:  Jingtian Liu; Zongyou Chen; Jianbin Xiang; Xiaodong Gu
Journal:  Oncol Lett       Date:  2018-02-16       Impact factor: 2.967

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