Literature DB >> 34246082

The transcription factor code in iPSC reprogramming.

Weixian Deng1, Elsie C Jacobson2, Amanda J Collier2, Kathrin Plath3.   

Abstract

Transcription factor (TF)-induced reprogramming of somatic cells across lineages and to induced pluripotent stem cells (iPSCs) has revealed a remarkable plasticity of differentiated cells and presents great opportunities for generating clinically relevant cell types for disease modeling and regenerative medicine. The understanding of iPSC reprogramming provides insights into the mechanisms that safeguard somatic cell identity, drive epigenetic reprogramming, and underlie cell fate specification in vivo. The combinatorial action of TFs has emerged as the key mechanism for the direct and indirect effects of reprogramming factors that induce the remodelling of the enhancer landscape. The interplay of TFs in iPSC reprogramming also yields trophectoderm- and extraembryonic endoderm-like cell populations, uncovering an intriguing plasticity of cell states and opening new avenues for exploring cell fate decisions during early embryogenesis.
Copyright © 2021 The Author(s). Published by Elsevier Ltd.. All rights reserved.

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Year:  2021        PMID: 34246082      PMCID: PMC9469655          DOI: 10.1016/j.gde.2021.06.003

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   4.665


  58 in total

1.  Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency.

Authors:  Kenjiro Adachi; Wolfgang Kopp; Guangming Wu; Sandra Heising; Boris Greber; Martin Stehling; Marcos J Araúzo-Bravo; Stefan T Boerno; Bernd Timmermann; Martin Vingron; Hans R Schöler
Journal:  Cell Stem Cell       Date:  2018-12-06       Impact factor: 24.633

Review 2.  Structural perspective of cooperative transcription factor binding.

Authors:  Ekaterina Morgunova; Jussi Taipale
Journal:  Curr Opin Struct Biol       Date:  2017-03-24       Impact factor: 6.809

3.  Diversification of reprogramming trajectories revealed by parallel single-cell transcriptome and chromatin accessibility sequencing.

Authors:  Q R Xing; Chadi A El Farran; Pradeep Gautam; Yu Song Chuah; Tushar Warrier; Cheng-Xu Delon Toh; Nam-Young Kang; Shigeki Sugii; Young-Tae Chang; Jian Xu; James J Collins; George Q Daley; Hu Li; Li-Feng Zhang; Yuin-Han Loh
Journal:  Sci Adv       Date:  2020-09-11       Impact factor: 14.136

4.  MLL1 Inhibition Reprograms Epiblast Stem Cells to Naive Pluripotency.

Authors:  Hui Zhang; Srimonta Gayen; Jie Xiong; Bo Zhou; Avinash K Shanmugam; Yuqing Sun; Hacer Karatas; Liu Liu; Rajesh C Rao; Shaomeng Wang; Alexey I Nesvizhskii; Sundeep Kalantry; Yali Dou
Journal:  Cell Stem Cell       Date:  2016-03-17       Impact factor: 24.633

5.  Role of the murine reprogramming factors in the induction of pluripotency.

Authors:  Rupa Sridharan; Jason Tchieu; Mike J Mason; Robin Yachechko; Edward Kuoy; Steve Horvath; Qing Zhou; Kathrin Plath
Journal:  Cell       Date:  2009-01-23       Impact factor: 41.582

Review 6.  Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution.

Authors:  Hannah K Long; Sara L Prescott; Joanna Wysocka
Journal:  Cell       Date:  2016-11-17       Impact factor: 41.582

7.  Effect of natural genetic variation on enhancer selection and function.

Authors:  S Heinz; C E Romanoski; C Benner; K A Allison; M U Kaikkonen; L D Orozco; C K Glass
Journal:  Nature       Date:  2013-10-13       Impact factor: 49.962

8.  Genome-scale screens identify JNK-JUN signaling as a barrier for pluripotency exit and endoderm differentiation.

Authors:  Qing V Li; Gary Dixon; Nipun Verma; Bess P Rosen; Miriam Gordillo; Renhe Luo; Chunlong Xu; Qiong Wang; Chew-Li Soh; Dapeng Yang; Miguel Crespo; Abhijit Shukla; Qing Xiang; Friederike Dündar; Paul Zumbo; Matthew Witkin; Richard Koche; Doron Betel; Shuibing Chen; Joan Massagué; Ralph Garippa; Todd Evans; Michael A Beer; Danwei Huangfu
Journal:  Nat Genet       Date:  2019-05-20       Impact factor: 38.330

9.  Nonreciprocal and Conditional Cooperativity Directs the Pioneer Activity of Pluripotency Transcription Factors.

Authors:  Sai Li; Eric Bo Zheng; Li Zhao; Shixin Liu
Journal:  Cell Rep       Date:  2019-09-03       Impact factor: 9.423

10.  Pluripotency reprogramming by competent and incompetent POU factors uncovers temporal dependency for Oct4 and Sox2.

Authors:  Vikas Malik; Laura V Glaser; Dennis Zimmer; Sergiy Velychko; Mingxi Weng; Markus Holzner; Marius Arend; Yanpu Chen; Yogesh Srivastava; Veeramohan Veerapandian; Zahir Shah; Miguel A Esteban; Huating Wang; Jiekai Chen; Hans R Schöler; Andrew P Hutchins; Sebastiaan H Meijsing; Sebastian Pott; Ralf Jauch
Journal:  Nat Commun       Date:  2019-08-02       Impact factor: 14.919

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  3 in total

1.  Chronic activation of MUC1-C in wound repair promotes progression to cancer stem cells.

Authors:  Donald W Kufe
Journal:  J Cancer Metastasis Treat       Date:  2022-03-31

2.  A real-time pluripotency reporter for the long-term and real-time monitoring of pluripotency changes in induced pluripotent stem cells.

Authors:  Hong-Fen Shen; Yong-Long Li; Shi-Hao Huang; Jia-Wei Xia; Zhi-Fang Yao; Gao-Fang Xiao; Ying Zhou; Ying-Chun Li; Jun-Wen Shi; Xiao-Lin Lin; Wen-Tao Zhao; Yan Sun; Yu-Guang Tian; Jun-Shuang Jia; Dong Xiao
Journal:  Aging (Albany NY)       Date:  2022-05-15       Impact factor: 5.955

Review 3.  Effects of Metabolism on Macrophage Polarization Under Different Disease Backgrounds.

Authors:  Jia-Xue Sun; Xiang-Hong Xu; Liping Jin
Journal:  Front Immunol       Date:  2022-07-14       Impact factor: 8.786

  3 in total

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