Literature DB >> 34245118

Nuclear speckles: dynamic hubs of gene expression regulation.

İbrahim Avşar Ilık1, Tuğçe Aktaş1.   

Abstract

Complex, multi-step biochemical reactions that routinely take place in our cells require high concentrations of enzymes, substrates and other structural components to proceed efficiently, and typically require chemical environments that can inhibit other reactions in their immediate vicinity. Eukaryotic cells solve these problems by restricting such reactions into diffusion-restricted compartments within the cell called organelles that can be separated from their environment by a lipid membrane, or into membrane-less compartments that form through liquid-liquid phase separation (LLPS). One of the most easily noticeable, and the earliest discovered organelle is the nucleus, which harbors the genetic material in cells where transcription by RNA polymerases produce most of the messenger RNAs and a plethora of noncoding RNAs, which in turn are required for translation of mRNAs in the cytoplasm. The interior of the nucleus is not a uniform soup of biomolecules, and rather consists of a variety of membraneless bodies, such as the nucleolus, nuclear speckles (NS), paraspeckles, Cajal bodies, histone locus bodies and more. In this review, we will focus on NS with an emphasis on recent developments including our own findings about the formation of NS by two large IDR-rich proteins SON and SRRM2. This article is protected by copyright. All rights reserved.

Entities:  

Keywords:  Nuclear speckles; Phase separation; SON; SRRM2; Splicing; Transcription

Year:  2021        PMID: 34245118     DOI: 10.1111/febs.16117

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  9 in total

1.  Variable penetrance of Nab3 granule accumulation quantified by a new tool for high-throughput single-cell granule analysis.

Authors:  Jeremy C Hunn; Katherine M Hutchinson; Joshua B Kelley; Daniel Reines
Journal:  Curr Genet       Date:  2022-03-17       Impact factor: 2.695

Review 2.  Herpesvirus Replication Compartments: Dynamic Biomolecular Condensates?

Authors:  Enrico Caragliano; Wolfram Brune; Jens B Bosse
Journal:  Viruses       Date:  2022-05-04       Impact factor: 5.818

3.  Genome-Directed Cell Nucleus Assembly.

Authors:  Sergey V Razin; Sergey V Ulianov
Journal:  Biology (Basel)       Date:  2022-05-05

Review 4.  Pathological phase transitions in ALS-FTD impair dynamic RNA-protein granules.

Authors:  Natalia B Nedelsky; J Paul Taylor
Journal:  RNA       Date:  2021-10-27       Impact factor: 4.942

5.  Phosphorylated viral protein evades plant immunity through interfering the function of RNA-binding protein.

Authors:  Juan Li; Huimin Feng; Shuang Liu; Peng Liu; Xuan Chen; Jin Yang; Long He; Jian Yang; Jianping Chen
Journal:  PLoS Pathog       Date:  2022-03-16       Impact factor: 6.823

6.  Mammalian nuclear speckles exhibit stable association with chromatin: a biochemical study.

Authors:  Komal Raina; Basuthkar J Rao
Journal:  Nucleus       Date:  2022-12       Impact factor: 4.197

Review 7.  An Unanticipated Modulation of Cyclin-Dependent Kinase Inhibitors: The Role of Long Non-Coding RNAs.

Authors:  Debora Bencivenga; Emanuela Stampone; Angela Vastante; Myassar Barahmeh; Fulvio Della Ragione; Adriana Borriello
Journal:  Cells       Date:  2022-04-14       Impact factor: 7.666

Review 8.  Keeping up with the condensates: The retention, gain, and loss of nuclear membrane-less organelles.

Authors:  Emma Lacroix; Timothy E Audas
Journal:  Front Mol Biosci       Date:  2022-09-20

Review 9.  Liquid-Liquid Phase Separation of Biomacromolecules and Its Roles in Metabolic Diseases.

Authors:  Zhihao Chen; Ying Huai; Wenjing Mao; Xuehao Wang; Kang Ru; Airong Qian; Hong Yang
Journal:  Cells       Date:  2022-09-27       Impact factor: 7.666

  9 in total

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