Literature DB >> 34245050

Dimensional reduction in complex living systems: Where, why, and how.

Jean-Pierre Eckmann1, Tsvi Tlusty2,3.   

Abstract

The unprecedented prowess of measurement techniques provides a detailed, multi-scale look into the depths of living systems. Understanding these avalanches of high-dimensional data-by distilling underlying principles and mechanisms-necessitates dimensional reduction. We propose that living systems achieve exquisite dimensional reduction, originating from their capacity to learn, through evolution and phenotypic plasticity, the relevant aspects of a non-random, smooth physical reality. We explain how geometric insights by mathematicians allow one to identify these genuine hallmarks of life and distinguish them from universal properties of generic data sets. We illustrate these principles in a concrete example of protein evolution, suggesting a simple general recipe that can be applied to understand other biological systems.
© 2021 The Authors. BioEssays published by Wiley Periodicals LLC.

Keywords:  allostery; data compression; dimensional reduction; genotype-to-phenotype map; intrinsic dimension; learning; protein evolution

Year:  2021        PMID: 34245050     DOI: 10.1002/bies.202100062

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  4 in total

1.  Inferring simple but precise quantitative models of human oocyte and early embryo development.

Authors:  Brian D Leahy; Catherine Racowsky; Daniel Needleman
Journal:  J R Soc Interface       Date:  2021-09-08       Impact factor: 4.293

2.  A topological look into the evolution of developmental programs.

Authors:  Somya Mani; Tsvi Tlusty
Journal:  Biophys J       Date:  2021-09-02       Impact factor: 3.699

Review 3.  An ensemble approach to the structure-function problem in microbial communities.

Authors:  Chandana Gopalakrishnappa; Karna Gowda; Kaumudi H Prabhakara; Seppe Kuehn
Journal:  iScience       Date:  2022-01-11

4.  The Statistical Trends of Protein Evolution: A Lesson from AlphaFold Database.

Authors:  Qian-Yuan Tang; Weitong Ren; Jun Wang; Kunihiko Kaneko
Journal:  Mol Biol Evol       Date:  2022-10-07       Impact factor: 8.800

  4 in total

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