Literature DB >> 34241559

To cap it all off, again: dynamic capping and recapping of coding and non-coding RNAs to control transcript fate and biological activity.

Klb Borden1, B Culjkovic-Kraljacic1, V H Cowling2.   

Abstract

The addition of the methyl-7-guanosine (m7G) "cap" on the 5' ends of coding and some non-coding RNAs is essential for their protein coding capacity and biochemical activity, respectively. It was previously considered that capping was a constitutive process that generates a complete cap on all transcripts at steady-state. However, development of new methodologies demonstrated that steady-state capping is a dynamic and regulatable feature of many coding and non-coding RNAs. Indeed, capping status of specific RNAs can flux during differentiation and development, thereby impacting on their protein-coding capacity and activity. Moreover, in some primary cancer specimens, capping can be elevated for transcripts encoding proteins involved in proliferation and survival corresponding to their increased protein levels. Overexpression of one of the capping enzymes (RNMT), the transcription factor MYC or the eukaryotic translation initiation factor eIF4E all led to increased levels of steady-state capping of selected transcripts. Additionally, transcripts can be decapped and recapped, allowing these to be sequestered until needed. This review provides a summary of the major advances in enzymatic and affinity-based approaches to quantify m7G capping. Further, we summarize the evidence for regulation of capping. Capping has emerged as a significant regulatory step in RNA metabolism which is poised to impact a myriad of biological processes.

Entities:  

Keywords:  RNA maturation; RNA capping; methyl-7-guanosine (m7G) ‘cap’

Mesh:

Substances:

Year:  2021        PMID: 34241559      PMCID: PMC8344758          DOI: 10.1080/15384101.2021.1930929

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  74 in total

1.  Multiple mRNA decapping enzymes in mammalian cells.

Authors:  Man-Gen Song; You Li; Megerditch Kiledjian
Journal:  Mol Cell       Date:  2010-11-12       Impact factor: 17.970

2.  A simple method for the preparation of [beta-32P]purine nucleoside triphosphase.

Authors:  Y Furuichi; A J Shatkin
Journal:  Nucleic Acids Res       Date:  1977-10       Impact factor: 16.971

3.  NanoCAGE: a high-resolution technique to discover and interrogate cell transcriptomes.

Authors:  Md Salimullah; Mizuho Sakai; Sakai Mizuho; Charles Plessy; Piero Carninci
Journal:  Cold Spring Harb Protoc       Date:  2011-01-01

4.  High-efficiency full-length cDNA cloning by biotinylated CAP trapper.

Authors:  P Carninci; C Kvam; A Kitamura; T Ohsumi; Y Okazaki; M Itoh; M Kamiya; K Shibata; N Sasaki; M Izawa; M Muramatsu; Y Hayashizaki; C Schneider
Journal:  Genomics       Date:  1996-11-01       Impact factor: 5.736

5.  CAP-MAP: cap analysis protocol with minimal analyte processing, a rapid and sensitive approach to analysing mRNA cap structures.

Authors:  Alison Galloway; Abdelmadjid Atrih; Renata Grzela; Edward Darzynkiewicz; Michael A J Ferguson; Victoria H Cowling
Journal:  Open Biol       Date:  2020-02-26       Impact factor: 6.411

6.  Identification of cytoplasmic capping targets reveals a role for cap homeostasis in translation and mRNA stability.

Authors:  Chandrama Mukherjee; Deepak P Patil; Brian A Kennedy; Baskar Bakthavachalu; Ralf Bundschuh; Daniel R Schoenberg
Journal:  Cell Rep       Date:  2012-08-23       Impact factor: 9.423

7.  c-Myc deregulation induces mRNA capping enzyme dependency.

Authors:  Olivia Lombardi; Dhaval Varshney; Nicola M Phillips; Victoria H Cowling
Journal:  Oncotarget       Date:  2016-12-13

8.  mRNA Cap Methylation in Pluripotency and Differentiation.

Authors:  Laura Grasso; Olga Suska; Lindsay Davidson; Thomas Gonatopoulos-Pournatzis; Ritchie Williamson; Lize Wasmus; Simone Wiedlich; Mark Peggie; Marios P Stavridis; Victoria H Cowling
Journal:  Cell Rep       Date:  2016-07-21       Impact factor: 9.423

9.  Cap homeostasis is independent of poly(A) tail length.

Authors:  Daniel L Kiss; Kenji M Oman; Julie A Dougherty; Chandrama Mukherjee; Ralf Bundschuh; Daniel R Schoenberg
Journal:  Nucleic Acids Res       Date:  2015-12-15       Impact factor: 16.971

10.  The eukaryotic translation initiation factor eIF4E elevates steady-state m7G capping of coding and noncoding transcripts.

Authors:  Biljana Culjkovic-Kraljacic; Lucy Skrabanek; Maria V Revuelta; Jadwiga Gasiorek; Victoria H Cowling; Leandro Cerchietti; Katherine L B Borden
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-14       Impact factor: 12.779

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  4 in total

1.  Biogenesis of telomerase RNA from a protein-coding mRNA precursor.

Authors:  Dhenugen Logeswaran; Yang Li; Khadiza Akhter; Joshua D Podlevsky; Tamara L Olson; Katherine Forsberg; Julian J-L Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-05       Impact factor: 12.779

2.  Identification and Characterization of the Interaction Between the Methyl-7-Guanosine Cap Maturation Enzyme RNMT and the Cap-Binding Protein eIF4E.

Authors:  Michael J Osborne; Laurent Volpon; Mina Memarpoor-Yazdi; Shubhadra Pillay; Aksharh Thambipillai; Sylwia Czarnota; Biljana Culjkovic-Kraljacic; Christian Trahan; Marlene Oeffinger; Victoria H Cowling; Katherine L B Borden
Journal:  J Mol Biol       Date:  2022-01-10       Impact factor: 6.151

Review 3.  The Epitranscriptome in miRNAs: Crosstalk, Detection, and Function in Cancer.

Authors:  Daniel Del Valle-Morales; Patricia Le; Michela Saviana; Giulia Romano; Giovanni Nigita; Patrick Nana-Sinkam; Mario Acunzo
Journal:  Genes (Basel)       Date:  2022-07-21       Impact factor: 4.141

Review 4.  The Cap-Binding Complex CBC and the Eukaryotic Translation Factor eIF4E: Co-Conspirators in Cap-Dependent RNA Maturation and Translation.

Authors:  Jean-Clement Mars; Mehdi Ghram; Biljana Culjkovic-Kraljacic; Katherine L B Borden
Journal:  Cancers (Basel)       Date:  2021-12-08       Impact factor: 6.639

  4 in total

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