Literature DB >> 34241518

Mechanical Frustration of Phase Separation in the Cell Nucleus by Chromatin.

Yaojun Zhang1,2, Daniel S W Lee2, Yigal Meir1,3,4, Clifford P Brangwynne5,6, Ned S Wingreen2,4.   

Abstract

Liquid-liquid phase separation is a fundamental mechanism underlying subcellular organization. Motivated by the striking observation that optogenetically generated droplets in the nucleus display suppressed coarsening dynamics, we study the impact of chromatin mechanics on droplet phase separation. We combine theory and simulation to show that cross-linked chromatin can mechanically suppress droplets' coalescence and ripening, as well as quantitatively control their number, size, and placement. Our results highlight the role of the subcellular mechanical environment on condensate regulation.

Year:  2021        PMID: 34241518     DOI: 10.1103/PhysRevLett.126.258102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  7 in total

Review 1.  Capillary forces generated by biomolecular condensates.

Authors:  Bernardo Gouveia; Yoonji Kim; Joshua W Shaevitz; Sabine Petry; Howard A Stone; Clifford P Brangwynne
Journal:  Nature       Date:  2022-09-07       Impact factor: 69.504

Review 2.  The mechanobiology of nuclear phase separation.

Authors:  Daniel S W Lee; Amy R Strom; Clifford P Brangwynne
Journal:  APL Bioeng       Date:  2022-04-28

3.  Cavitation controls droplet sizes in elastic media.

Authors:  Estefania Vidal-Henriquez; David Zwicker
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-05       Impact factor: 11.205

Review 4.  Putting the Squeeze on Phase Separation.

Authors:  Carla Fernández-Rico; Tianqi Sai; Alba Sicher; Robert W Style; Eric R Dufresne
Journal:  JACS Au       Date:  2021-12-10

5.  Chromatin network retards nucleoli coalescence.

Authors:  Yifeng Qi; Bin Zhang
Journal:  Nat Commun       Date:  2021-11-24       Impact factor: 14.919

6.  Characterizing locus specific chromatin structure and dynamics with correlative conventional and super-resolution imaging in living cells.

Authors:  Dushyant Mehra; Santosh Adhikari; Chiranjib Banerjee; Elias M Puchner
Journal:  Nucleic Acids Res       Date:  2022-07-22       Impact factor: 19.160

7.  Multiscale modeling of genome organization with maximum entropy optimization.

Authors:  Xingcheng Lin; Yifeng Qi; Andrew P Latham; Bin Zhang
Journal:  J Chem Phys       Date:  2021-07-07       Impact factor: 3.488

  7 in total

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