| Literature DB >> 34234603 |
Su-Jin Baek1, Hyo-Jeong Ban1, Sang-Min Park1, Boyoung Lee1, Yoorae Choi1, Younghwa Baek1, Siwoo Lee1, Seongwon Cha1.
Abstract
PURPOSE: Persistent poor sleep quality leads to impaired cognitive performance and an inability to perform daily activities. Biomarker-assisted diagnosis is important for the early treatment of poor sleep quality; however, diagnostic biomarkers for poor sleep quality remain unidentified. Circulating microRNAs (miRNAs) have been reported to be linked to the pathogenesis of poor sleep quality, indicating their possible role in sleep problem diagnosis. The present study aimed to identify potential miRNA biomarkers for poor sleep quality. PATIENTS AND METHODS: Differentially expressed serum miRNAs in patients with poor sleep quality and healthy controls (n=20) were analyzed via small RNA sequencing. Two-step quantitative RT-PCR in the two independent populations and receiver operating characteristic (ROC) analyses were used to validate the identified miRNAs. In silico analysis was then used to identify the target genes.Entities:
Keywords: expression profiling; inappropriate sleep quality; miRNA; serum
Year: 2021 PMID: 34234603 PMCID: PMC8254567 DOI: 10.2147/NSS.S311541
Source DB: PubMed Journal: Nat Sci Sleep ISSN: 1179-1608
Characteristics of the 179 Participants in This Study
| Group | Subgroup | Gender | n | Age (y) | Body Mass Index (kg/m2) | Pittsburgh Sleep Quality Index |
|---|---|---|---|---|---|---|
| NGS | Case | All | 10 | 35.4 ± 5.7 | 24.0 ± 2.8 | 10.5 (9–13) |
| Men | 5 | 37.2 ± 8.0 | 25.6 ± 3.0 | 10 (9–13) | ||
| Women | 5 | 33.6 ± 1.3 | 22.5 ± 1.6 | 11 (9–11) | ||
| Control | All | 10 | 36.9 ± 4.1 | 24.1 ± 3.1 | 1 (0–2) | |
| Men | 5 | 37.1 ± 3.2 | 25.9 ± 1.4 | 1 (1–2) | ||
| Women | 5 | 36.6 ± 5.2 | 22.3 ± 3.3 | 1 (0–1) | ||
| 1st validation | Case | All | 30 | 38.2 ± 5.1 | 23.0 ± 3.4 | 8 (6–11) |
| Men | 12 | 37.2 ± 4.5 | 24.9 ± 3.7 | 9 (7–11) | ||
| Women | 18 | 38.9 ± 5.5 | 21.7 ± 2.5 | 8 (6–11) | ||
| Control | All | 30 | 38.3 ± 4.3 | 22.7 ± 2.7 | 2 (0–4) | |
| Men | 15 | 37.7 ± 4.8 | 24.0 ± 2.9 | 3(2–4) | ||
| Women | 15 | 39.0 ± 3.8 | 21.4 ± 1.8 | 1 (0–2) | ||
| 2nd validation | Case | All | 29 | 40.4 ± 2.9 | 22.0 ± 1.6 | 9 (6–17) |
| Men | 13 | 39.3 ± 2.3 | 23.1 ± 0.99 | 8 (6–15) | ||
| Women | 16 | 41.3 ± 3.1 | 21.1 ± 1.5 | 11 (8–17) | ||
| Control | All | 30 | 40.0 ± 2.9 | 21.9 ± 1.5 | 2 (0–5) | |
| Men | 14 | 40.0 ± 3.7 | 22.6 ± 1.4 | 3.5 (2–5) | ||
| Women | 16 | 40.0 ± 2.2 | 21.3 ± 1.3 | 1 (0–2) | ||
| ROC | Case | All | 20 | 39.7 ± 3.9 | 21.5 ± 2.1 | 8.5 (6–15) |
| Men | 10 | 39.5 ± 4.5 | 21.5 ± 2.1 | 8 (6–15) | ||
| Women | 10 | 40.0 ± 3.5 | 22.0 ± 1.6 | 9 (8–15) | ||
| Control | All | 20 | 39.7 ± 2.6 | 21.2 ± 2.1 | 2 (0–5) | |
| Men | 10 | 39.4 ± 2.4 | 22.2 ± 2.2 | 4 (2–5) | ||
| Women | 10 | 40.0 ± 2.9 | 20.2 ± 1.5 | 1 (0–2) |
Note: Values are presented as mean ± standard deviation except Pittsburgh sleep quality index (median and range).
Abbreviations: NGS, next-generation sequencing; ROC, receiver operating characteristic.
Figure 1Overall flow diagram of study inclusion. Overall scheme to identify miRNA as potential biomarker. Number of study participants according to overall design.
Figure 2The 59 DEmiRs in the serum of patients with poor sleep quality compared with that in controls. A volcano plot to visualize the DEmiRs between the poor sleep quality and sleep control groups in women (A) and men (B). The red dots represent upregulated expression, and the blue dots represent downregulated expression. (C) Venn diagram is illustrated to compare the number of DEmiRs between women and men. Venn diagram showing detailed distributions among the number of DEmiRs. (D) Dot plot showing gene ontology functions for the 59 DEmiRs. Only the enriched pathways with a p-value <0.05 are shown. The size of the dots represents the DEmiR count, and the colors represent p-values.
Figure 3The first verification of the six candidate miRNAs via RT-qPCR. The expression levels of circulating miRNAs in the poor sleep quality group compared with that in the sleep control group. (A) let-7a (B) miR-296 (C) miR-619 (D) miR-642 (E) miR-1273d, and (F) miR-4433b. (Blue box: control; green box: poor sleep quality).
Figure 4Detection of two candidate miRNAs. (A) Expression levels of miR-4433b-3p via RT-qPCR (B) Expression levels of miR-619-5p via RT-qPCR (C) Scatter plot based on Pearson correlation between miR-4433b-3p and miR-619-5p expression levels (D) Diagnostic power of the two miRNA candidates using ROC analysis.
Figure 5The miRNA-mRNA interaction network for poor sleep quality. Integrated networks of the miRNA-mRNA interaction (correlation p-value <0.05). Yellow and green circles represent miRNAs and functional terms, the blue and red circles represent the inversely correlated target genes and positively correlated target genes.