Literature DB >> 34226949

Integrated transcriptome and miRNA sequencing approaches provide insights into salt tolerance in allotriploid Populus cathayana.

Tong Qiu1,2,3, Kang Du1,2,3, Yanchun Jing1,2,3, Qingqing Zeng1,2,3, Zhao Liu1,2,3, Yun Li1,2,3, Yongyu Ren1,2,3, Jun Yang1,2,3, Xiangyang Kang4,5,6.   

Abstract

MAIN
CONCLUSION: Some salt-stress responsive DEGs, mainly involved in ion transmembrane transport, hormone regulation, antioxidant system, osmotic regulation, and some miRNA jointly regulated the salt response process in allotriploid Populus cathayana. The molecular mechanism of plant polyploid stress resistance has been a hot topic in biological research. In this study, Populus diploids and first division restitution (FDR) and second division restitution (SDR) triploids were selected as research materials. All materials were treated with 70 mM NaCl solutions for 30 days in the same pot environment. We observed the growth state of triploids and diploids and determined the ratio of potassium and sodium ions, peroxidase (POD) activity, proline content, and ABA and jasmonic acid (JA) hormone content in leaves in the same culture environment with the same concentration of NaCl solution treatment. In addition, RNA-seq technology was used to study the differential expression of mRNA and miRNA. The results showed that triploid Populus grew well and the K+ content and the K+/Na+ ratio in the salt treatment were significantly lower than those in the control. The contents of ABA, JA, POD, and proline were increased compared with contents in diploid under salt stress. The salt-stress responsive DEGs were mainly involved in ion transport, cell homeostasis, the MAPK signaling pathway, peroxisome, citric acid cycle, and other salt response and growth pathways. The transcription factors mainly included NAC, MYB, MYB_related and AP2/ERF. Moreover, the differentially expressed miRNAs involved 32 families, including 743 miRNAs related to predicted target genes, among which 22 miRNAs were significantly correlated with salt-stress response genes and related to the regulation of hormones, ion transport, reactive oxygen species (ROS) and other biological processes. Our results provided insights into the physiological and molecular aspects for further research into the response mechanisms of allotriploid Populus cathayana to salt stress. This study provided valuable information for the salt tolerance mechanism of allopolyploids.

Entities:  

Keywords:  Ion transport; Phytohormone; Polyploids; ROS; Transcription factor

Mesh:

Substances:

Year:  2021        PMID: 34226949     DOI: 10.1007/s00425-021-03600-9

Source DB:  PubMed          Journal:  Planta        ISSN: 0032-0935            Impact factor:   4.116


  38 in total

1.  Differential transcriptome analysis between Populus and its synthesized allotriploids driven by second-division restitution.

Authors:  Shiping Cheng; Zhen Huang; Yun Li; Ting Liao; Yujing Suo; Pingdong Zhang; Jun Wang; Xiangyang Kang
Journal:  J Integr Plant Biol       Date:  2015-04-03       Impact factor: 7.061

Review 2.  Plant salt-tolerance mechanisms.

Authors:  Ulrich Deinlein; Aaron B Stephan; Tomoaki Horie; Wei Luo; Guohua Xu; Julian I Schroeder
Journal:  Trends Plant Sci       Date:  2014-03-14       Impact factor: 18.313

3.  Salt and drought stresses induce the aberrant expression of microRNA genes in tobacco.

Authors:  Taylor P Frazier; Guiling Sun; Caitlin E Burklew; Baohong Zhang
Journal:  Mol Biotechnol       Date:  2011-10       Impact factor: 2.695

4.  Polyploids exhibit higher potassium uptake and salinity tolerance in Arabidopsis.

Authors:  Dai-Yin Chao; Brian Dilkes; Hongbing Luo; Alex Douglas; Elena Yakubova; Brett Lahner; David E Salt
Journal:  Science       Date:  2013-07-25       Impact factor: 47.728

5.  Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.

Authors:  Muhammad Amjad Ali; Farrukh Azeem; Muhammad Amjad Nawaz; Tuba Acet; Amjad Abbas; Qari Muhammad Imran; Kausar Hussain Shah; Hafiz Mamoon Rehman; Gyuhwa Chung; Seung Hwan Yang; Holger Bohlmann
Journal:  J Plant Physiol       Date:  2018-04-17       Impact factor: 3.549

6.  Enhanced expression of AtNHX1, in transgenic groundnut (Arachis hypogaea L.) improves salt and drought tolerence.

Authors:  Muhammad Ahsan Asif; Yusuf Zafar; Javaid Iqbal; Muhammad Munir Iqbal; Umer Rashid; Ghulam Muhammad Ali; Anjuman Arif; Farhat Nazir
Journal:  Mol Biotechnol       Date:  2011-11       Impact factor: 2.695

7.  An Arabidopsis R2R3-MYB transcription factor, AtMYB20, negatively regulates type 2C serine/threonine protein phosphatases to enhance salt tolerance.

Authors:  Mei Hua Cui; Kyoung Shin Yoo; Sujin Hyoung; Ha Thi Kim Nguyen; Yun Young Kim; Hae Jin Kim; Sung Han Ok; Sang Dong Yoo; Jeong Sheop Shin
Journal:  FEBS Lett       Date:  2013-05-06       Impact factor: 4.124

8.  The PILNCR1-miR399 Regulatory Module Is Important for Low Phosphate Tolerance in Maize.

Authors:  Qingguo Du; Kai Wang; Cheng Zou; Cheng Xu; Wen-Xue Li
Journal:  Plant Physiol       Date:  2018-07-02       Impact factor: 8.340

9.  Ionic selectivity and coordinated transport of Na+ and K+ in flag leaves render differential salt tolerance in rice at the reproductive stage.

Authors:  Koushik Chakraborty; Krishnendu Chattaopadhyay; Lopamudra Nayak; Soham Ray; Lucina Yeasmin; Priyanka Jena; Sunanda Gupta; Sangram K Mohanty; Padmini Swain; Ramani K Sarkar
Journal:  Planta       Date:  2019-08-09       Impact factor: 4.540

10.  Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance.

Authors:  Joann Diray-Arce; Mark Clement; Bilquees Gul; M Ajmal Khan; Brent L Nielsen
Journal:  BMC Genomics       Date:  2015-05-06       Impact factor: 3.969

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  1 in total

Review 1.  The Intersection of Non-Coding RNAs Contributes to Forest Trees' Response to Abiotic Stress.

Authors:  Dandan Xiao; Min Chen; Xiaoqian Yang; Hai Bao; Yuzhang Yang; Yanwei Wang
Journal:  Int J Mol Sci       Date:  2022-06-07       Impact factor: 6.208

  1 in total

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