| Literature DB >> 34222840 |
Shan Lu1,2,3, Weijia Wang4, Yanpeng Cheng5, Caixin Yang5, Yifan Jiao5, Mingchao Xu6, Yibo Bai5, Jing Yang1,2,3, Hongbin Song7, Ligui Wang7, Jiaojiao Wang8, Bing Rong9, Jianguo Xu1,2,3,10.
Abstract
The re-emerging outbreak of COVID-19 in Beijing, China, in the summer of 2020 originated from a SARS-CoV-2-infested wholesale food supermarket. We postulated that the Xinfadi market outbreak has links with food-trade activities. Our Susceptible to the disease, Infectious, and Recovered coupled Agent Based Modelling (SIR-ABM) analysis for studying the diffusion of SARS-CoV-2 particles suggested that the trade-distancing strategy effectively reduces the reproduction number (R0). The retail shop closure strategy reduced the number of visitors to the market by nearly half. In addition, the buy-local policy option reduced the infection by more than 70% in total. Therefore, retail closures and buy-local policies could serve as significantly effective strategies that have the potential to reduce the size of the outbreak and prevent probable outbreaks in the future.Entities:
Keywords: Agent Based Modelling; COVID-19 outbreak; Control measures; Food distribution network; Transmission mechanism
Year: 2021 PMID: 34222840 PMCID: PMC8233866 DOI: 10.1016/j.jobb.2021.04.002
Source DB: PubMed Journal: J Biosaf Biosecur ISSN: 2588-9338
Fig. 2Spatial epidemiological analysis maps of COVID-19 outbreak in Xinfadi market: White dots represent survey sites with the COVID-19 confirmed cases from the Seller cohort. Black dots represent cases from the Buyer cohort. Grey dots indicate survey sites with the Contacts cohort. Spatial distribution and transmission conducted for A) Xinfadi service area (shown in shade for 5 km and 10 km zone) zoning and trade routing (Pink network links) with other markets; B) Seller epidemiological links; C) Buyer epidemiological links; D) Exposure population grids showing the number of susceptible individuals near case location, warm colors represent high probability of the COVID-19 transmission and cool colors represent low disease transmission probability.
Fig. 3Simulation of the trade-associated transmission of COVID-19 outbreak using a SIR-ABM model: (A) Map of trade connections with source contaminated wholesale food supermarket in Xinfadi displayed for individual markets and each district; (B) Conditional Map showing the spatial distribution of the total COVID-19 cases with the associated categories of the conditioning distribution of Buyers and Stores. Local Spatial Autocorrelation analysis conducted with Bivariate Local Moran’s I examined for Buyer and Contact cohorts with maps of COVID-19 cases (graduated symbol) and statistically significant hotspot locations near Xinfadi clusters; (C) high-high and low-low clusters; (D) Significance Map based on 999 permutations with a p-value of 0.05.
Fig. 4The trade-associated outbreak simulated with a SIR-ABM model. (A) Moran’s I scatter plot showing a positive spatial correlation between Buyers and Contacts groups; (B) Model interface, mitigation options, and exposure population in different groups modeled with linked Seller/Buyer/Contact groups.
Fig. 1The transmission of COVID-19 among the sellers and buyers in Xinfadi market.
Ranking (numbers and percent shares) of trade-related stores with Xinfadi supermarket.
| Rank | Districts in Beijing | Province | ||||
|---|---|---|---|---|---|---|
| 1 | Chaoyang | 1118 | 25.69% | Tianjin | 71 | 11.36% |
| 2 | Fengtai | 842 | 19.35% | Hebei | 67 | 10.72% |
| 3 | Haidian | 536 | 12.32% | Shandong | 50 | 8.00% |
| 4 | Xicheng | 496 | 11.40% | Guangdong | 45 | 7.20% |
| 5 | Daxing | 412 | 9.47% | Sichuan | 38 | 6.08% |
| 6 | Dongcheng | 377 | 8.66% | Hunan | 31 | 4.96% |
| 7 | Chanping | 111 | 2.55% | Shaanxi | 29 | 4.64% |
| 8 | Shijingshan | 102 | 2.34% | Shanxi | 28 | 4.48% |
| 9 | Fangshan | 93 | 2.14% | Hainan | 27 | 4.32% |
| 10 | Tongzhou | 84 | 1.93% | Jiangsu | 26 | 4.16% |
Travel time from Xinfadi supermarket to selected trade-related stores.
| ID | Store name | Lon-Lat | Travel time (h) |
|---|---|---|---|
| 5084892121 | 7 11 | 116.4260876, 39.9203105 | 0.16 |
| 286279253 | AnNingZhuang Mei Lian Mei Supermarket | 116.3186344, 40.0486722 | 0.25 |
| 2653420501 | April Gourmet | 116.4650825, 39.9438535 | 0.21 |
| 5949236085 | April Gourmet | 116.44851, 39.931148 | 0.18 |
| 4858657858 | April Gourmet - The closest place to home | 116.4390726, 39.9350067 | 0.18 |
| 734837929 | Carrefour | 116.4091105, 40.0575851 | 0.28 |
| 4787685124 | Carrefour | 116.309415, 39.9782079 | 0.18 |
| 5078954923 | Carrefour | 116.6502656, 39.8887683 | 0.29 |
| 5349977123 | Carrefour | 116.4258436, 39.8926043 | 0.13 |
| 2039584328 | Carrefour Dazhongsi | 116.3364935, 39.9655119 | 0.00 |
| 6759234985 | Eon supermarkets | 116.2834799, 40.0948269 | 0.30 |
| 5592820921 | Ganyu Dele Supermarket | 116.4084267, 39.9154817 | 0.14 |
| 4607766099 | H + Supermarket | 116.5504555, 40.00932 | 0.30 |
| 3011898463 | Hua Lian Supermarket | 116.4661798, 39.9887498 | 0.24 |
| 4356841690 | Huapu | 116.4326985, 39.9233175 | 0.16 |
| 5630082221 | Jenny Lou's | 116.4886988, 39.9388923 | 0.22 |
| 4890761922 | Jenny Wang Shop | 116.4773422, 39.974959 | 0.23 |
| 5421820602 | Jingkelong | 116.4953008, 39.9377552 | 0.22 |
| 4706051389 | JingKeLong JinZhan | 116.5724355, 40.0012368 | 0.32 |
| 6842478816 | Korean Supermarket | 116.8274017, 40.1542585 | 0.58 |
| 5811578954 | Local market | 116.3986243, 39.8596252 | 0.09 |
| 5811595253 | Local market | 116.4069923, 39.8686387 | 0.10 |
| 1709527090 | Lotte Mart | 116.4849686, 39.9744152 | 0.24 |
| 5963394690 | Magazin Jura | 116.4375932, 39.9174063 | 0.16 |
| 6356133586 | Magsin Jura | 116.4345947, 39.9165563 | 0.16 |
| 973328223 | Meilianmei | 116.3789307, 39.9498561 | 0.16 |
| 4486190290 | Merry Mart | 116.3680372, 39.9212437 | 0.12 |
| 820144091 | MetroSuper | 116.4555915, 39.9666669 | 0.21 |
| 4966402621 | Minimart | 116.4110572, 39.9333912 | 0.16 |
| 6052524200 | Natural | 116.3377602, 39.9242233 | 0.11 |
| 5570615523 | New Mart | 116.4098313, 40.0389857 | 0.26 |
| 2034233477 | New World Department Store | 116.4117658, 39.8970656 | 0.12 |
| 6203038185 | Nick’s Mart | 116.4729639, 39.9757867 | 0.23 |
| 5020076125 | ShijiHualian | 116.3513898, 40.0716736 | 0.27 |
| 4751803422 | Smart Air | 116.4391971, 39.9351994 | 0.18 |
| 5837667486 | SunMart (diverse and cheap), food and supermarket | 116.3736532, 39.9246066 | 0.13 |
| 4503942371 | Tsinghua University Northwest Supermarket | 116.3128114, 40.0096102 | 0.21 |
| 5335960521 | U center | 116.3085101, 39.9945849 | 0.20 |
| 1305021210 | Vanguard Supermarket | 116.4840365, 39.9839974 | 0.24 |
| 4581719836 | Walmart | 116.3264218, 40.0289732 | 0.23 |
| 4711123690 | Walmart | 116.2747578, 39.9524165 | 0.17 |
| 6052523998 | Wu Mart | 116.3310814, 39.8966254 | 0.09 |
| 2948819433 | WuMart | 116.405532, 39.993857 | 0.22 |
| 4459857289 | Wumart | 116.3002526, 39.9881062 | 0.19 |
| 2482406776 | WUMART Hypermarket | 116.4369302, 39.8040625 | 0.09 |
| 2010091934 | Wumart Supermarket | 116.4244122, 39.9225959 | 0.16 |
| 4826732999 | Wumart Supermarket | 116.5357584, 40.0979942 | 0.38 |
| 1253420852 | WuMei Super Martket of Miyun | 116.8394726, 40.3737251 | 0.58 |
| 6572173085 | Youhui Wanja Supermarket | 116.4057959, 39.9351906 | 0.16 |
| 1030342288 | Your Goal Supermarket | 116.3387505, 39.9805127 | 0.18 |