Literature DB >> 34221676

Integration of light scattering with machine learning for label free cell detection.

Wendy Yu Wan1,2, Lina Liu1,2, Xiaoxuan Liu1, Wei Wang1, Md Zahurul Islam1,3, Chunhua Dong4, Craig R Garen4, Michael T Woodside4, Manisha Gupta1, Mrinal Mandal1, Wojciech Rozmus4, Ying Yin Tsui1.   

Abstract

Light scattering has been used for label-free cell detection. The angular light scattering patterns from the cells are unique to them based on the cell size, nucleus size, number of mitochondria, and cell surface roughness. The patterns collected from the cells can then be classified based on different image characteristics. We have also developed a machine learning (ML) method to classify these cell light scattering patterns. As a case study we have used this light scattering technique integrated with the machine learning to analyze staurosporine-treated SH-SY5Y neuroblastoma cells and compare them to non-treated control cells. Experimental results show that the ML technique can provide a classification accuracy (treated versus non-treated) of over 90%. The predicted percentage of the treated cells in a mixed solution is within 5% of the reference (ground-truth) value and the technique has the potential to be a viable method for real-time detection and diagnosis.
© 2021 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.

Entities:  

Year:  2021        PMID: 34221676      PMCID: PMC8221935          DOI: 10.1364/BOE.424357

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  29 in total

1.  Flow cytometry: retrospective, fundamentals and recent instrumentation.

Authors:  Julien Picot; Coralie L Guerin; Caroline Le Van Kim; Chantal M Boulanger
Journal:  Cytotechnology       Date:  2012-01-21       Impact factor: 2.058

2.  Measurements of light scattering in an integrated microfluidic waveguide cytometer.

Authors:  Xuan-Tao Su; Kirat Singh; Clarence Capjack; Jirí Petrácek; Christopher Backhouse; Wojciech Rozmus
Journal:  J Biomed Opt       Date:  2008 Mar-Apr       Impact factor: 3.170

3.  Measurement and autocorrelation analysis of two-dimensional light-scattering patterns from living cells for label-free classification.

Authors:  Yong-Le Pan; Matthew J Berg; Samuel Shao-Min Zhang; Heeso Noh; Hui Cao; Richard K Chang; Gorden Videen
Journal:  Cytometry A       Date:  2011-03-08       Impact factor: 4.355

4.  Microscope-based label-free microfluidic cytometry.

Authors:  Xuantao Su; Sean E Kirkwood; Manisha Gupta; Leah Marquez-Curtis; Yuanyuan Qiu; Anna Janowska-Wieczorek; Wojciech Rozmus; Ying Y Tsui
Journal:  Opt Express       Date:  2011-01-03       Impact factor: 3.894

5.  Label-free and noninvasive optical detection of the distribution of nanometer-size mitochondria in single cells.

Authors:  Xuantao Su; Yuanyuan Qiu; Leah Marquez-Curtis; Manisha Gupta; Clarence E Capjack; Wojciech Rozmus; Anna Janowska-Wieczorek; Ying Y Tsui
Journal:  J Biomed Opt       Date:  2011-06       Impact factor: 3.170

Review 6.  SH-SY5Y human neuroblastoma cell line: in vitro cell model of dopaminergic neurons in Parkinson's disease.

Authors:  Hong-rong Xie; Lin-sen Hu; Guo-yi Li
Journal:  Chin Med J (Engl)       Date:  2010-04-20       Impact factor: 2.628

7.  Citicoline increases glutathione redox ratio and reduces caspase-3 activation and cell death in staurosporine-treated SH-SY5Y human neuroblastoma cells.

Authors:  Marta Barrachina; Julio Secades; Rafael Lozano; Cristina Gómez-Santos; Santiago Ambrosio; Isidro Ferrer
Journal:  Brain Res       Date:  2002-12-06       Impact factor: 3.252

8.  Monoamine oxidase-A modulates apoptotic cell death induced by staurosporine in human neuroblastoma cells.

Authors:  Julia C Fitzgerald; Christoph Ufer; Luigi A De Girolamo; Hartmut Kuhn; E Ellen Billett
Journal:  J Neurochem       Date:  2007-09-18       Impact factor: 5.372

9.  Effects of neurosteroids on hydrogen peroxide- and staurosporine-induced damage of human neuroblastoma SH-SY5Y cells.

Authors:  M Leskiewicz; M Regulska; B Budziszewska; D Jantas; L Jaworska-Feil; A Basta-Kaim; M Kubera; G Jagla; W Nowak; W Lason
Journal:  J Neurosci Res       Date:  2008-05-01       Impact factor: 4.164

10.  High-throughput label-free molecular fingerprinting flow cytometry.

Authors:  Kotaro Hiramatsu; Takuro Ideguchi; Yusuke Yonamine; SangWook Lee; Yizhi Luo; Kazuki Hashimoto; Takuro Ito; Misa Hase; Jee-Woong Park; Yusuke Kasai; Shinya Sakuma; Takeshi Hayakawa; Fumihito Arai; Yu Hoshino; Keisuke Goda
Journal:  Sci Adv       Date:  2019-01-16       Impact factor: 14.136

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  1 in total

1.  Single cell classification of macrophage subtypes by label-free cell signatures and machine learning.

Authors:  David Dannhauser; Domenico Rossi; Vincenza De Gregorio; Paolo Antonio Netti; Giuseppe Terrazzano; Filippo Causa
Journal:  R Soc Open Sci       Date:  2022-09-28       Impact factor: 3.653

  1 in total

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