| Literature DB >> 34221084 |
Suxian Liu1,2, Qiaodong Li1,2, Fengzhi Liu3,4, Hui Cao1,2, Jun Liu1,2, Jingyi Shan1, Wenchao Dan4,5, Jianye Yuan1,2, Jiang Lin1,2.
Abstract
AIM: The incidence of ulcerative colitis (UC) is increasing steadily in developed countries, it is plaguing nearly 1 million people in the United States and European countries, while developing countries have had a rapidly increased incidence over the past decades. Curcuma is widely used in treating malaria, UC, Crohn's disease, and colon cancer, which lead to diarrhea and bloody stool. However, the systemic mechanism of curcuma in treating UC is still unclear. Our work was supposed to expound how does curcuma alleviate UC in a comprehensive and systematic way by network pharmacology, molecular docking, and experiment verification.Entities:
Year: 2021 PMID: 34221084 PMCID: PMC8225429 DOI: 10.1155/2021/6629761
Source DB: PubMed Journal: Evid Based Complement Alternat Med ISSN: 1741-427X Impact factor: 2.629
Figure 1The workflow of the study. Chemical constituents of curcuma were collected from TCMSP, SGST, CNKI, and PubMed based on druglikeness and oral bioavailability. The active compounds were collected further and imported into Swiss Target Prediction to get protein targets of curcuma. Then, we obtained UC-related genes from GeneCards and DrugBank, and coincident genes from curcuma and UC were collected for molecular docking to filter the proteins binding with compounds stronger than 5-ASA. PPI network was carried out by using the STRING database. GO and KEGG pathway analyses were performed by Metascape, and compound-target-pathway network was executed by Cytoscape. Further experimental verification and pathway analysis were carried out to interpret the mechanism.
Basic information for curcuma compound ingredients.
| CAS | Molecule name | Structure | OB (%)/GI absorption | Druglikeness |
|---|---|---|---|---|
| 474-62-4 | Campesterol |
| 37.58 | 0.71 |
| 57-88-5 | CLR |
| 37.87 | 0.68 |
| 83-48-7 | Stigmasterol |
| 43.87 | 0.76 |
| 76474-56-1▲ | Dihydrocurcumin |
| High | 0.55 |
| 22608-12-4▲ | Bisdemethoxycurcumin |
| High | 0.55 |
| 22608-11-3▲ | Demethoxycurcumin |
| High | 0.55 |
| 458-37-7▲ | Curcumin |
| High | 0.55 |
| 87440-60-6▲ | Curlone |
| High | 0.55 |
| 21698-40-8▲ | Procurcumenol |
| High | 0.55 |
| 83-46-5▲ | Beta-sitosterol |
| High | 0.55 |
| 2309-07-1☆ | Methyl ferulate [ |
| High | 0.55 |
| 121-33-5☆ | Vanillin [ |
| High | 0.55 |
| NA☆ | 1,7-Bis(4-hydroxy-3-methoxyphenyl)-1,4,6-heptadiene-4-one [ |
| High | 0.55 |
Ingredients searched from TCMSP. ▲Ingredients searched from SGST. ☆Ingredients searched from CNKI and PubMed.
Figure 2Matching of target genes between UC and curcuma.
Information on potential targets and the topological attributes.
| No. | Gene name | Protein name | UniProt ID | Degree |
|---|---|---|---|---|
| 1 | AKT1 | AKT serine/threonine kinase 1 | P31749 | 43 |
| 2 | EGFR | Epidermal growth factor receptor | P00533 | 35 |
| 3 | TNF | Tumor necrosis factor | P01375 | 35 |
| 4 | STAT3 | Signal transducer and activator of transcription 3 | P40763 | 33 |
| 5 | PTGS2 | Prostaglandin-endoperoxide synthase 2 | P35354 | 32 |
| 6 | MMP9 | Matrix metallopeptidase 9 | P50281 | 31 |
| 7 | ESR1 | Estrogen receptor 1 | P03372 | 25 |
| 8 | EP300 | E1A-binding protein P300 | Q09472 | 23 |
| 9 | TLR4 | Toll-like receptor 4 | O00206 | 23 |
| 10 | PPARG | Peroxisome proliferator-activated receptor gamma | P37231 | 20 |
| 11 | SERPINE1 | Serpin family E member 1 | P05121 | 18 |
| 12 | CDK4 | Cyclin-dependent kinase 4 | P11802 | 14 |
| 13 | NR3C1 | Nuclear receptor subfamily 3 group C member 1 | P04150 | 14 |
| 14 | CDK1 | Cyclin-dependent kinase 1 | P06493 | 13 |
| 15 | CDK2 | Cyclin-dependent kinase 2 | P24941 | 13 |
| 16 | MMP3 | Matrix metallopeptidase 3 | P08254 | 13 |
| 17 | ADAM17 | ADAM metallopeptidase domain 17 | P78536 | 12 |
| 18 | CHEK1 | Checkpoint kinase 1 | O14757 | 12 |
| 19 | LCK | LCK proto-oncogene, Src family tyrosine kinase | P06239 | 12 |
| 20 | MMP13 | Matrix metallopeptidase 13 | P45452 | 12 |
| 21 | CXCR2 | C-X-C motif chemokine receptor 2 | P25025 | 11 |
| 22 | MMP14 | Matrix metallopeptidase 14 | P50281 | 11 |
| 23 | MMP7 | Matrix metallopeptidase 7 | P09237 | 11 |
| 24 | RPS6KB1 | Ribosomal protein S6 kinase B1 | P23443 | 11 |
| 25 | CA9 | Carbonic anhydrase 9 | Q16790 | 10 |
| 26 | NOS2 | Nitric oxide synthase 2 | P22894 | 10 |
| 27 | PTGS1 | Prostaglandin-endoperoxide synthase 1 | P23219 | 10 |
| 28 | TLR9 | Toll-like receptor 9 | Q9NR96 | 10 |
| 29 | ALOX5 | Arachidonate 5-lipoxygenase | P09917 | 9 |
| 30 | MET | MET proto-oncogene, receptor tyrosine kinase | P08581 | 9 |
| 31 | MMP8 | Matrix metallopeptidase 8 | P22894 | 9 |
| 32 | RAF1 | Raf-1 proto-oncogene, serine/threonine kinase | P04049 | 9 |
| 33 | AURKA | Aurora kinase A | O14965 | 8 |
| 34 | BCL2 | BCL2 apoptosis regulator | P10415 | 8 |
| 35 | ESR2 | Estrogen receptor 2 | Q92731 | 8 |
| 36 | F3 | Coagulation factor III, tissue factor | P13726 | 8 |
| 37 | MIF | Macrophage migration inhibitory factor | P14174 | 8 |
| 38 | NFE2L2 | Nuclear factor, erythroid 2 like 2 | P09237 | 8 |
| 39 | TOP1 | DNA topoisomerase I | P11387 | 8 |
| 40 | ALOX15 | Arachidonate 15-lipoxygenase | P16050 | 7 |
| 41 | DPP4 | Dipeptidyl peptidase 4 | P27487 | 7 |
| 42 | PTPN2 | Protein tyrosine phosphatase nonreceptor type 2 | P17706 | 7 |
| 43 | ABCC1 | ATP binding cassette subfamily C member 1 | P33527 | 6 |
| 44 | PPARA | Peroxisome proliferator-activated receptor alpha | Q07869 | 6 |
| 45 | VDR | Vitamin D receptor | P11473 | 6 |
| 46 | CYP2C19 | Cytochrome P450 family 2 subfamily C member 19 | P33261 | 5 |
| 47 | BRAF | B-Raf proto-oncogene, serine/threonine kinase | P15056 | 3 |
| 48 | HTR1A | 5-Hydroxytryptamine receptor 1A | P08908 | 3 |
| 49 | RORC | RAR-related orphan receptor C | P51449 | 3 |
| 50 | SLC6A4 | Solute carrier family 6 member 4 | P31645 | 3 |
| 51 | TYR | Tyrosinase | P14679 | 3 |
| 52 | NR1H2 | Nuclear receptor subfamily 1 group H member 2 | P55055 | 2 |
| 53 | PTGER2 | Prostaglandin E receptor 2 | P43116 | 2 |
| 54 | HSD11B1 | Hydroxysteroid 11-beta dehydrogenase 1 | P28845 | 2 |
Figure 324 proteins whose docking energy with curcuma compounds was above that of 5-ASA.
Figure 4PPI network between UC and curcuma. Each node represented a target for curcuma in the treatment of UC. The smaller size and the darker color mean the lower degree value. The edges among nodes display the relationship between different targets. The larger edge size and the brighter edge color mean the higher combination scores.
Figure 5Target biological function and target-pathway analysis. (a) Biological process of curcuma in the treatment of UC. (b) Molecular function of curcuma in the treatment of UC. (c) Cellular components of curcuma in the treatment of UC. (d) Signal pathway of curcuma in the treatment of UC.
Figure 6Component-target-pathway network of potential pathways in the treatment of UC by curcuma. The green colored circles correspond to the core common targets and the compounds calculated in blue were pathways that contain the targets, and the nodes in yellow are components in curcuma.
Figure 7Effects of curcuma on colon tissue. (a) Control. (b) Model. (c) Curcuma.
Figure 8Effects of protein expression in each group (n = 12). P < 0.05 and P < 0.01.
Figure 9Curcuma played a therapeutic role in UC by regulating inflammatory bowel disease pathway.