Literature DB >> 34219980

Chiara Lichtenthaeler1, Lasse Oberstrass1, Julia E Weigand1.   

Abstract

Posttranscriptional regulation at mRNA level is defined not only by sequence, but also by the structure of the mRNA. Structures in the untranslated regions control stability, translation and localization of an mRNA. Evolutionary conservation can be used to identify such regulatory active structures in mRNAs. For example, constitutive decay element (CDE) stem-loops are recognized by Roquin proteins in an exclusively shape-specific manner. Strikingly, some CDEs can serve a dual function in gene repression depending on their folding status. © Die Autoren 2021.

Entities:  

Year:  2021        PMID： 34219980      PMCID： PMC8233640          DOI： 10.1007/s12268-021-1600-x

Source DB:  PubMed          Journal:  Biospektrum (Heidelb)        ISSN： 0947-0867


  10 in total

Review 1.  Turnover of AU-rich-containing mRNAs during stress: a matter of survival.

Authors:  Christopher von Roretz; Sergio Di Marco; Rachid Mazroui; Imed-Eddine Gallouzi
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-10-19       Impact factor: 9.957

2.  Structural basis for RNA recognition in roquin-mediated post-transcriptional gene regulation.

Authors:  Andreas Schlundt; Gitta A Heinz; Robert Janowski; Arie Geerlof; Ralf Stehle; Vigo Heissmeyer; Dierk Niessing; Michael Sattler
Journal:  Nat Struct Mol Biol       Date:  2014-07-13       Impact factor: 15.369

3.  A Distinct, Sequence-Induced Conformation Is Required for Recognition of the Constitutive Decay Element RNA by Roquin.

Authors:  Luca Codutti; Kathrin Leppek; Jan Zálešák; Volker Windeisen; Pawel Masiewicz; Georg Stoecklin; Teresa Carlomagno
Journal:  Structure       Date:  2015-07-09       Impact factor: 5.006

4.  Roquin promotes constitutive mRNA decay via a conserved class of stem-loop recognition motifs.

Authors:  Kathrin Leppek; Johanna Schott; Sonja Reitter; Fabian Poetz; Ming C Hammond; Georg Stoecklin
Journal:  Cell       Date:  2013-05-09       Impact factor: 41.582

5.  Identification of new high affinity targets for Roquin based on structural conservation.

Authors:  Johannes Braun; Sandra Fischer; Zhenjiang Z Xu; Hongying Sun; Dalia H Ghoneim; Anna T Gimbel; Uwe Plessmann; Henning Urlaub; David H Mathews; Julia E Weigand
Journal:  Nucleic Acids Res       Date:  2018-12-14       Impact factor: 16.971

6.  A large-scale binding and functional map of human RNA-binding proteins.

Authors:  Eric L Van Nostrand; Peter Freese; Gabriel A Pratt; Xiaofeng Wang; Xintao Wei; Rui Xiao; Steven M Blue; Jia-Yu Chen; Neal A L Cody; Daniel Dominguez; Sara Olson; Balaji Sundararaman; Lijun Zhan; Cassandra Bazile; Louis Philip Benoit Bouvrette; Julie Bergalet; Michael O Duff; Keri E Garcia; Chelsea Gelboin-Burkhart; Myles Hochman; Nicole J Lambert; Hairi Li; Michael P McGurk; Thai B Nguyen; Tsultrim Palden; Ines Rabano; Shashank Sathe; Rebecca Stanton; Amanda Su; Ruth Wang; Brian A Yee; Bing Zhou; Ashley L Louie; Stefan Aigner; Xiang-Dong Fu; Eric Lécuyer; Christopher B Burge; Brenton R Graveley; Gene W Yeo
Journal:  Nature       Date:  2020-07-29       Impact factor: 49.962

7.  Roquin recognizes a non-canonical hexaloop structure in the 3'-UTR of Ox40.

Authors:  Robert Janowski; Gitta A Heinz; Andreas Schlundt; Nina Wommelsdorf; Sven Brenner; Andreas R Gruber; Michael Blank; Thorsten Buch; Raymund Buhmann; Mihaela Zavolan; Dierk Niessing; Vigo Heissmeyer; Michael Sattler
Journal:  Nat Commun       Date:  2016-03-24       Impact factor: 14.919

8.  Structural basis for the recognition of transiently structured AU-rich elements by Roquin.

Authors:  Oliver Binas; Jan-Niklas Tants; Stephen A Peter; Robert Janowski; Elena Davydova; Johannes Braun; Dierk Niessing; Harald Schwalbe; Julia E Weigand; Andreas Schlundt
Journal:  Nucleic Acids Res       Date:  2020-06-03       Impact factor: 16.971

Review 9.  Important Trends in UCP3 Investigation.

Authors:  Elena E Pohl; Anne Rupprecht; Gabriel Macher; Karolina E Hilse
Journal:  Front Physiol       Date:  2019-04-30       Impact factor: 4.566

10.  Secondary structure determination of conserved SARS-CoV-2 RNA elements by NMR spectroscopy.

Authors:  Anna Wacker; Julia E Weigand; Sabine R Akabayov; Nadide Altincekic; Jasleen Kaur Bains; Elnaz Banijamali; Oliver Binas; Jesus Castillo-Martinez; Erhan Cetiner; Betül Ceylan; Liang-Yuan Chiu; Jesse Davila-Calderon; Karthikeyan Dhamotharan; Elke Duchardt-Ferner; Jan Ferner; Lucio Frydman; Boris Fürtig; José Gallego; J Tassilo Grün; Carolin Hacker; Christina Haddad; Martin Hähnke; Martin Hengesbach; Fabian Hiller; Katharina F Hohmann; Daniel Hymon; Vanessa de Jesus; Henry Jonker; Heiko Keller; Bozana Knezic; Tom Landgraf; Frank Löhr; Le Luo; Klara R Mertinkus; Christina Muhs; Mihajlo Novakovic; Andreas Oxenfarth; Martina Palomino-Schätzlein; Katja Petzold; Stephen A Peter; Dennis J Pyper; Nusrat S Qureshi; Magdalena Riad; Christian Richter; Krishna Saxena; Tatjana Schamber; Tali Scherf; Judith Schlagnitweit; Andreas Schlundt; Robbin Schnieders; Harald Schwalbe; Alvaro Simba-Lahuasi; Sridhar Sreeramulu; Elke Stirnal; Alexey Sudakov; Jan-Niklas Tants; Blanton S Tolbert; Jennifer Vögele; Lena Weiß; Julia Wirmer-Bartoschek; Maria A Wirtz Martin; Jens Wöhnert; Heidi Zetzsche
Journal:  Nucleic Acids Res       Date:  2020-12-16       Impact factor: 16.971
  10 in total

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