| Literature DB >> 34219867 |
Nia Kurnianingsih1,2,3, Retty Ratnawati2, Tommy Alfandy Nazwar4, Mulyohadi Ali5, Fatchiyah Fatchiyah6,3.
Abstract
INTRODUCTION: The development of new antidepressant is crucial to overcome the remission rate limitation. Anthocyanin on purple sweet potatoes (PSP) from East Java cultivar previously demonstrated a behavioural effect. However, the certain mechanism and the nutritional compound need further exploration. AIM: This study aimed to characterize macronutrient content, amino acids, anthocyanin, and revealed the potential of PSP from East Java-Indonesia as antidepressant agent through D2-dopamine receptor (D2DR).Entities:
Keywords: anthocyanin; dopamine; in-silico; physicochemical; purple potatoes
Mesh:
Substances:
Year: 2021 PMID: 34219867 PMCID: PMC8228585 DOI: 10.5455/medarh.2021.75.94-100
Source DB: PubMed Journal: Med Arch ISSN: 0350-199X
Figure 1.The identification of anthocyanin was determined using UHPLC analysis. The level of absorbance was measured at 520nm wavelengths. Three major anthocyanins were identified
Interaction ligand of dopamine, cyanidin and cyanidin-3-O-glucoside on D2DR
| Interaction D2DR with dopamine | |||
| Interaction | Category | Type | |
| 2.6 | Hydrogen Bond | Conventional Hydrogen Bond | |
| 2.7 | Hydrogen Bond | Conventional Hydrogen Bond | |
| 2.6 | Hydrogen Bond | Conventional Hydrogen Bond | |
| 1.9 | Hydrogen Bond | Conventional Hydrogen Bond | |
| 3.1 | Hydrogen Bond | Conventional Hydrogen Bond | |
| 2.5 | Hydrogen Bond | Conventional Hydrogen Bond | |
| 4.9 | Hydrophobic | Pi-Pi T-shaped | |
| 5.4 | Hydrophobic | Pi-Pi T-shaped | |
| 4.0 | Hydrophobic | Pi-Alkyl | |
| Interaction D2DR with ligand cyanidin | |||
| 2.7 | Hydrogen bond | Conventional hydrogen bond | |
| 2.1 | Hydrogen bond | Conventional hydrogen bond | |
| 1.9 | Hydrogen bond | Conventional hydrogen bond | |
| 3.0 | Hydrogen bond | Conventional hydrogen bond | |
| 3.4 | Electrostatic | Pi-Anion | |
| 4.7 | Hydrophobic | Pi-Pi T-shaped | |
| 5.1 | Hydrophobic | Pi-Pi T-shaped | |
| 4.9 | Hydrophobic | Pi-Pi T-shaped | |
| 4.6 | Hydrophobic | Pi-Pi T-shaped | |
| 4.9 | Hydrophobic | Pi-Pi T-shaped | |
| 4.1 | Hydrophobic | Pi-Alkyl | |
| Interaction D2DR with cyanidin-3-O-glucoside | |||
| 1.9 | Hydrogen bond | Conventional hydrogen bond | |
| 2.8 | Hydrogen bond | Conventional hydrogen bond | |
| 2.2 | Hydrogen bond | Conventional hydrogen bond | |
| 2.2 | Hydrogen bond | Conventional hydrogen bond | |
| 2.9 | Hydrogen bond | Conventional hydrogen bond | |
| 4.0 | Hydrophobic | Pi-Sigma | |
| UNKO-A:TYR408 | 4.7 | Hydrophobic | Pi-Pi Stacked |
| UNKO-A:TYR408 | 4.1 | Hydrophobic | Pi-Pi Stacked |
Figure 2.The molecular docking interaction visualization of dopamine (A), cyanidin (B) and cyanidin-3-O-glucoside (C) with D2DR. Dopamine is shown as yellow while anthocyanins are shown as red color. The left panel showed 3D interaction and the right panel is the 2D diagram interaction.
Figure 3.The Dopamine_D2DR complex was docked with anthocyanin (A-B). The Anthocyanins_D2DR complex were interacted with dopamine. Dopamine is shown as yellow while anthocyanins are shown as red color. The left panel showed 3D interaction and the right panel is the 2D diagram interaction.
SUPLEMENT TABLES
| Interaction D2DR_dopamine with cyanidin | |||
| Point of interaction | Distance (Ao) | Category | Type |
| 2.0 | Hydrogen bond | Conventional hydrogen bond | |
| 2.3 | Hydrogen bond | Conventional hydrogen bond | |
| 2.4 | Hydrogen bond | Conventional hydrogen bond | |
| 2.9 | Hydrogen bond | Conventional hydrogen bond | |
| 3.4 | Electrostatic | Pi-Anion | |
| 5.9 | Hydrophobic | Pi-Pi T-shaped | |
| 4.7 | Hydrophobic | Pi-Pi T-shaped | |
| 4.9 | Hydrophobic | Pi-Pi T-shaped | |
| 4.6 | Hydrophobic | Pi-Pi T-shaped | |
| 4.9 | Hydrophobic | Pi-Pi T-shaped | |
| 4.1 | Hydrophobic | Pi-Alkyl | |
| Interaction D2DR_dopamine with cyanidin-3-O-glucoside | |||
| 2.4 | Hydrogen bond | Conventional hydrogen bond | |
| 1.9 | Hydrogen bond | Conventional hydrogen bond | |
| 3.2 | Hydrogen bond | Conventional hydrogen bond | |
| 3.6 | Hydrophobic | Pi-Sigma | |
| 4.7 | Hydrophobic | Pi-Pi Stacked | |
| 4.0 | Hydrophobic | Pi-Pi Stacked | |
| Interaction Cyanidin_ D2DR with dopamine | |||
| 2.2 | Hydrogen Bond | Conventional Hydrogen Bond | |
| 2.4 | Hydrogen Bond | Conventional Hydrogen Bond | |
| 3.5 | Hydrogen Bond | Carbon Hydrogen Bond | |
| 3.3 | Hydrogen Bond | Carbon Hydrogen Bond | |
| 3.7 | Hydrophobic | Pi - Pi Stacked | |
| Interaction Cyanidin-3-glucoside_D2DR with dopamine | |||
| 2.2 | Hydrogen Bond | Conventional Hydrogen Bond | |
| 2.4 | Hydrogen Bond | Conventional Hydrogen Bond | |
| 3.5 | Hydrogen Bond | Carbon Hydrogen Bond | |
| 3.3 | Hydrogen Bond | Carbon Hydrogen Bond | |
| 3.7 | Hydrophobic | Pi - Pi Stacked | |
| Interaction Cyanidin_ D2 dopamine receptor with dopamine | |||
| UNK1:H - A:ASP114:OD1 | 2.2 | Hydrogen Bond | Conventional Hydrogen Bond |
| UNK1:H - A:ASP114:OD1 | 2.4 | Hydrogen Bond | Conventional Hydrogen Bond |
| UNK1:C - A:VAL115:O | 3.5 | Hydrogen Bond | Carbon Hydrogen Bond |
| UNK1:C - A:MET116:O | 3.3 | Hydrogen Bond | Carbon Hydrogen Bond |
| UNK1 - :UNK0 | 3.7 | Hydrophobic | Pi - Pi Stacked |