Literature DB >> 34216322

Analyzing the impact of ATF3 in tumorigenesis and immune cell infiltration of ovarian tumor: a bioinformatics study.

Xiaoliu Li1, Panpan Liu1, Xiaona Sun1, Runhong Ma1, Ting Cui1, Ting Wang1, Yang Bai1, Yuxia Li1, Xiujuan Wu2, Xianling Feng3.   

Abstract

ATF3 is an essential transcription activator in regulating cancer-related genetic expression. To identify the role of ATF3 in ovarian tumor, we investigated the correlation between ATF3 expression and the clinicopathological properties using multiple database. The cBioPortal and GEPIA database displayed the clinical information of ovarian patients harboring or without harboring ATF3 mutation. Furthermore, we assessed the relationship between survival and ATF3 expression level using Kaplan-Meier plotter, which reveals that the ovarian patients with higher expression of ATF3 suffered the worse overall survival and progression-free survival. The differentially expressed genes were analyzed using gene ontology, protein-protein interaction network, and gene set enrichment analysis to identify the hub gene and critical pathways, significantly affecting the tumorigenesis of ovarian tumor. Finally, we assessed the correlation between ATF3 and immune cell infiltration using Tumor Immunoassay Resource (TIMER) database. The results demonstrated that higher expression has a positive correlation with macrophage infiltration, expression for M1- and M2-type macrophages. Our study suggests that ATF3 can regulate the cell cycle and heme-related oxidative phosphorylation process, and it may be a critical factor to regulate the macrophage cell to be infiltrated into ovarian cancer. ATF3 can be used as a biomarker for diagnosis and therapy of ovarian tumor.

Entities:  

Keywords:  ATF3; Bioinformatical analysis; Immune cell infiltration; Ovarian

Mesh:

Substances:

Year:  2021        PMID: 34216322     DOI: 10.1007/s12032-021-01541-7

Source DB:  PubMed          Journal:  Med Oncol        ISSN: 1357-0560            Impact factor:   3.064


  3 in total

1.  Induction of heparanase 2 (Hpa2) expression by stress is mediated by ATF3.

Authors:  Ibrahim Knani; Preeti Singh; Miriam Gross-Cohen; Sharon Aviram; Neta Ilan; Ralph D Sanderson; Ami Aronheim; Israel Vlodavsky
Journal:  Matrix Biol       Date:  2021-11-20       Impact factor: 11.583

2.  Adaptive transcriptomic and immune infiltrate responses in the tumor immune microenvironment following neoadjuvant chemotherapy in high grade serous ovarian cancer reveal novel prognostic associations and activation of pro-tumorigenic pathways.

Authors:  Nicole E James; Morgan Woodman; Payton De La Cruz; Katrin Eurich; Melih Arda Ozsoy; Christoph Schorl; Linda C Hanley; Jennifer R Ribeiro
Journal:  Front Immunol       Date:  2022-09-05       Impact factor: 8.786

3.  RTN2, a new member of circadian clock genes identified by database mining and bioinformatics prediction, is highly expressed in ovarian cancer.

Authors:  Xiaojiao Zheng; Xiuyi Lv; Jinghan Chai; Yi Huang; Linyan Zhu; Xianning Zhang
Journal:  Mol Med Rep       Date:  2022-09-30       Impact factor: 3.423

  3 in total

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