Literature DB >> 34212963

A critical review on the use of DP4+ in the structural elucidation of natural products: the good, the bad and the ugly. A practical guide.

Maribel O Marcarino1, Soledad Cicetti1, María M Zanardi2, Ariel M Sarotti1.   

Abstract

Covering: 2015 up to the end of 2020Even in the golden age of NMR, the number of natural products being incorrectly assigned is becoming larger every day. The use of quantum NMR calculations coupled with sophisticated data analysis provides ideal complementary tools to facilitate the elucidation process in challenging cases. Among the current computational methodologies to perform this task, the DP4+ probability is a popular and widely used method. This updated version of Goodman's DP4 synergistically combines NMR calculations at higher levels of theory with the Bayesian analysis of both scaled and unscaled data. Since its publication in late 2015, the use of DP4+ to solve controversial natural products has substantially grown, with several predictions being confirmed by total synthesis. To date, the structures of more than 200 natural products were determined with the aid of DP4+. However, all that glitters is not gold. Besides its intrinsic limitations, on many occasions it has been improperly used with potentially important consequences on the quality of the assignment. Herein we present a critical revision on how the scientific community has been using DP4+, exploring the strengths of the method and how to obtain optimal results from it. We also analyze the weaknesses of DP4+, and the paths to by-pass them to maximize the confidence in the structural elucidation.

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Year:  2022        PMID: 34212963     DOI: 10.1039/d1np00030f

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  5 in total

1.  Novel Triterpenoid Alkaloids With Their Potential Cytotoxic Activity From the Roots of Siraitia grosvenorii.

Authors:  Huijuan Wang; Guoxu Ma; Huaxiang Wang; Lingyu Li; Aijun Dong; Huiping Liu; Xiaoshuang Huo; Jianyong Si; Junchi Wang
Journal:  Front Chem       Date:  2022-04-29       Impact factor: 5.545

Review 2.  Approaches to Configuration Determinations of Flexible Marine Natural Products: Advances and Prospects.

Authors:  Zong-Qing Huo; Feng Zhu; Xing-Wang Zhang; Xiao Zhang; Hong-Bao Liang; Jing-Chun Yao; Zhong Liu; Gui-Min Zhang; Qing-Qiang Yao; Guo-Fei Qin
Journal:  Mar Drugs       Date:  2022-05-19       Impact factor: 6.085

3.  The Natural Products Atlas 2.0: a database of microbially-derived natural products.

Authors:  Jeffrey A van Santen; Ella F Poynton; Dasha Iskakova; Emily McMann; Tyler A Alsup; Trevor N Clark; Claire H Fergusson; David P Fewer; Alison H Hughes; Caitlin A McCadden; Jonathan Parra; Sylvia Soldatou; Jeffrey D Rudolf; Elisabeth M-L Janssen; Katherine R Duncan; Roger G Linington
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

4.  Synthesis of the C1-C27 Fragment of Stambomycin D Validates Modular Polyketide Synthase-Based Stereochemical Assignments.

Authors:  Jieyan Lim; Venkaiah Chintalapudi; Haraldur G Gudmundsson; Minh Tran; Alice Bernasconi; Araceli Blanco; Lijiang Song; Gregory L Challis; Edward A Anderson
Journal:  Org Lett       Date:  2021-09-08       Impact factor: 6.005

5.  Cytotoxic Sesquiterpenoids from Ammoides atlantica Aerial Parts.

Authors:  Sihem Boudermine; Valentina Parisi; Redouane Lemoui; Tarek Boudiar; Maria Giovanna Chini; Silvia Franceschelli; Michela Pecoraro; Maria Pascale; Giuseppe Bifulco; Alessandra Braca; Nunziatina De Tommasi; Marinella De Leo
Journal:  J Nat Prod       Date:  2022-02-23       Impact factor: 4.050

  5 in total

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