Literature DB >> 34207507

Maize (Zea mays L.): A New Host for Ligustrum witches' Broom Phytoplasma.

Behçet Kemal Çağlar1, Serkan Pehlivan1, Ekrem Atakan1, Toufic Elbeaino2.   

Abstract

In the 2019-2020 growing season, two corn fields located in İmamoğlu town (Adana Province, Turkey) were surveyed following the appearance of phytoplasma-like symptoms on maize plants. A total of 40 samples were collected and tested in first-round and nested PCR using universal primer pairs P1/P7 and R16F2n/R16R2, respectively. All maize-diseased plants reacted positively, whilst no PCR amplifications were obtained from asymptomatic plants. Blast sequence analysis of R16F2n/R16R2-primed amplicons from different maize isolates showed 99.2% to 100% of identity with the 16S rRNA gene of Ligustrum witches' broom phytoplasma (LiWBP). To gain additional molecular information on the 16S ribosomal RNA and 23S rRNA intergenic spacer region of LiWBP, not identified previously, the P1/P7-primed amplicons were also sequenced and analyzed. The results show that maize isolates from Turkey share 99.6% to 100% of identity among them, whereas the highest identity found (91%) was with members of groups 16SrII and 16SrXXV (peanut and tea witches' broom groups, respectively). This distant relationship between LiWBP and members of 16SrII and XXV was also confirmed by RFLP and phylogenetic analyses. This is the first finding of LiWBP on maize in nature, where it was found responsible for phyllody disease of corn plants in Turkey. The additional molecular information acquired in this study on the 16S-23S rRNA intergenic spacer region of LiWBP further corroborates its distant relationship to any other phytoplasma groups.

Entities:  

Keywords:  16S rDNA; PCR; RFLP; maize; phyllody; phylogenetic analysis; phytoplasma

Year:  2021        PMID: 34207507      PMCID: PMC8230117          DOI: 10.3390/pathogens10060723

Source DB:  PubMed          Journal:  Pathogens        ISSN: 2076-0817


  7 in total

1.  Prospects for inferring very large phylogenies by using the neighbor-joining method.

Authors:  Koichiro Tamura; Masatoshi Nei; Sudhir Kumar
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-16       Impact factor: 11.205

2.  'Candidatus Phytoplasma', a taxon for the wall-less, non-helical prokaryotes that colonize plant phloem and insects.

Authors: 
Journal:  Int J Syst Evol Microbiol       Date:  2004-07       Impact factor: 2.747

3.  Automated RFLP pattern comparison and similarity coefficient calculation for rapid delineation of new and distinct phytoplasma 16Sr subgroup lineages.

Authors:  Wei Wei; Ing-Ming Lee; Robert E Davis; Xiaobing Suo; Yan Zhao
Journal:  Int J Syst Evol Microbiol       Date:  2008-10       Impact factor: 2.747

4.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

5.  The iPhyClassifier, an interactive online tool for phytoplasma classification and taxonomic assignment.

Authors:  Yan Zhao; Wei Wei; Ing-Ming Lee; Jonathan Shao; Xiaobing Suo; Robert E Davis
Journal:  Methods Mol Biol       Date:  2013

6.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

7.  First Report of a 16SrIX Group (Pigeon Pea Witches'-Broom) Phytoplasma Associated with Sesame Phyllody in Turkey.

Authors:  M Catal; C Ikten; E Yol; R Üstün; B Uzun
Journal:  Plant Dis       Date:  2013-06       Impact factor: 4.438

  7 in total

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