Literature DB >> 34207308

Further Validation of Quantum Crystallography Approaches.

Monika Wanat1,2, Maura Malinska1, Anna A Hoser1, Krzysztof Woźniak1.   

Abstract

Quantum crystallography is a fast-developing multidisciplinary area of crystallography. In this work, we analyse the influence of different charge density models (i.e., the multipole model (MM), Hirshfeld atom refinement (HAR), and the transferable aspherical atom model (TAAM)), modelling of the thermal motion of hydrogen atoms (anisotropic, isotropic, and with the aid of SHADE or NoMoRe), and the type of radiation used (Mo Kα and Cu Kα) on the final results. To achieve this aim, we performed a series of refinements against X-ray diffraction data for three model compounds and compared their final structures, geometries, shapes of ADPs, and charge density distributions. Our results were also supported by theoretical calculations that enabled comparisons of the lattice energies of these structures. It appears that geometrical parameters are better described (closer to the neutron values) when HAR is used; however, bonds to H atoms more closely match neutron values after MM or TAAM refinement. Our analysis shows the superiority of the NoMoRe method in the description of H-atom ADPs. Moreover, the shapes of the ADPs of H atoms, as well as their electron density distributions, were better described with low-resolution Cu Kα data in comparison to low-resolution Mo Kα data.

Entities:  

Keywords:  Hirshfeld atom refinement; charge density; multipole model; normal mode refinement; transferable aspherical atom model

Year:  2021        PMID: 34207308     DOI: 10.3390/molecules26123730

Source DB:  PubMed          Journal:  Molecules        ISSN: 1420-3049            Impact factor:   4.411


  5 in total

1.  Influence of modelling disorder on Hirshfeld atom refinement results of an organo-gold(I) compound.

Authors:  Sylwia Pawlędzio; Maura Malinska; Florian Kleemiss; Simon Grabowsky; Krzysztof Woźniak
Journal:  IUCrJ       Date:  2022-06-11       Impact factor: 5.588

2.  Rotamers in Crystal Structures of Xylitol, D-Arabitol and L-Arabitol.

Authors:  Monika Wanat; Maura Malinska; Malgorzata Kucia; Rafal R Sicinski; Krzysztof Woźniak
Journal:  Int J Mol Sci       Date:  2022-03-31       Impact factor: 5.923

3.  Study of the Addition Mechanism of 1H-Indazole and Its 4-, 5-, 6-, and 7-Nitro Derivatives to Formaldehyde in Aqueous Hydrochloric Acid Solutions.

Authors:  Ibon Alkorta; Rosa M Claramunt; José Elguero; Enrique Gutiérrez-Puebla; M Ángeles Monge; Felipe Reviriego; Christian Roussel
Journal:  J Org Chem       Date:  2022-04-11       Impact factor: 4.198

4.  Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement.

Authors:  Michal L Chodkiewicz; Roman Gajda; Barbara Lavina; Sergey Tkachev; Vitali B Prakapenka; Przemyslaw Dera; Krzysztof Wozniak
Journal:  IUCrJ       Date:  2022-07-16       Impact factor: 5.588

5.  First Experimental Quantitative Charge Density Studies of Advanced Intermediate of Vitamin D Analogues.

Authors:  Monika Wanat; Maura Malinska; Andrzej Kutner; Krzysztof Woźniak
Journal:  Molecules       Date:  2022-03-08       Impact factor: 4.411

  5 in total

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