Literature DB >> 34206388

Molecular Taxonomy and Diversification of Atlantic Skates (Chondrichthyes, Rajiformes): Adding More Pieces to the Puzzle of Their Evolutionary History.

Valentina Crobe1, Alice Ferrari1, Robert Hanner2, Robin W Leslie3,4, Dirk Steinke5, Fausto Tinti1, Alessia Cariani1.   

Abstract

Conservation and long-term management plans of marine species need to be based upon the universally recognized key-feature of species identity. This important assignment is particularly challenging in skates (Rajiformes) in which the phenotypic similarity between some taxa and the individual variability in others, hampers accurate species identification. Here, 432 individual skate samples collected from four major ocean areas of the Atlantic were barcoded and taxonomically analysed. A BOLD project ELASMO ATL was implemented with the aim of establishing a new fully available and well curated barcode library containing both biological and molecular information. The evolutionary histories of the 38 skate taxa were estimated with two concatenated mitochondrial markers (COI and NADH2) through Maximum Likelihood and Bayesian inference. New evolutionary lineages within the genus Raja were discovered off Angola, where paleogeographic history coupled with oceanographic discontinuities could have contributed to the establishment of isolated refugia, playing a fundamental role among skates' speciation events. These data successfully resolved many taxonomic ambiguities, identified cryptic diversity within valid species and demonstrated a highly cohesive monophyletic clustering among the order, laying the background for further inference of evolutionary patterns suitable for addressing management and conservation issues.

Entities:  

Keywords:  Atlantic Ocean; COI; DNA barcoding; NADH2; phylogenetic inference; skates

Year:  2021        PMID: 34206388     DOI: 10.3390/life11070596

Source DB:  PubMed          Journal:  Life (Basel)        ISSN: 2075-1729


  55 in total

1.  An index of substitution saturation and its application.

Authors:  Xuhua Xia; Zheng Xie; Marco Salemi; Lu Chen; Yong Wang
Journal:  Mol Phylogenet Evol       Date:  2003-01       Impact factor: 4.286

2.  FISH-BOL and seafood identification: geographically dispersed case studies reveal systemic market substitution across Canada.

Authors:  Robert Hanner; Sven Becker; Natalia V Ivanova; Dirk Steinke
Journal:  Mitochondrial DNA       Date:  2011-10

3.  ABGD, Automatic Barcode Gap Discovery for primary species delimitation.

Authors:  N Puillandre; A Lambert; S Brouillet; G Achaz
Journal:  Mol Ecol       Date:  2011-08-29       Impact factor: 6.185

4.  PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses.

Authors:  Robert Lanfear; Paul B Frandsen; April M Wright; Tereza Senfeld; Brett Calcott
Journal:  Mol Biol Evol       Date:  2017-03-01       Impact factor: 16.240

5.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

6.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

Review 7.  Cryptic species as a window on diversity and conservation.

Authors:  David Bickford; David J Lohman; Navjot S Sodhi; Peter K L Ng; Rudolf Meier; Kevin Winker; Krista K Ingram; Indraneil Das
Journal:  Trends Ecol Evol       Date:  2006-11-28       Impact factor: 17.712

8.  MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Authors:  Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck
Journal:  Syst Biol       Date:  2012-02-22       Impact factor: 15.683

9.  A ranking system for reference libraries of DNA barcodes: application to marine fish species from Portugal.

Authors:  Filipe O Costa; Monica Landi; Rogelia Martins; Maria H Costa; Maria E Costa; Miguel Carneiro; Maria J Alves; Dirk Steinke; Gary R Carvalho
Journal:  PLoS One       Date:  2012-04-25       Impact factor: 3.240

10.  Natural history and molecular evolution of demersal Mediterranean sharks and skates inferred by comparative phylogeographic and demographic analyses.

Authors:  Alice Ferrari; Fausto Tinti; Victoria Bertucci Maresca; Alessandro Velonà; Rita Cannas; Ioannis Thasitis; Filipe Oliveira Costa; Maria Cristina Follesa; Daniel Golani; Farid Hemida; Sarah J Helyar; Cecilia Mancusi; Antonello Mulas; Fabrizio Serena; Letizia Sion; Marco Stagioni; Alessia Cariani
Journal:  PeerJ       Date:  2018-09-18       Impact factor: 2.984

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.