Literature DB >> 34194050

The ENIGMA Toolbox: multiscale neural contextualization of multisite neuroimaging datasets.

Sara Larivière1, Casey Paquola2,3, Bo-Yong Park2,4, Jessica Royer2, Yezhou Wang2, Oualid Benkarim2, Reinder Vos de Wael2, Sofie L Valk5,6, Sophia I Thomopoulos7, Matthias Kirschner8, Lindsay B Lewis9,10, Alan C Evans9,10, Sanjay M Sisodiya11,12, Carrie R McDonald13, Paul M Thompson7, Boris C Bernhardt14.   

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Year:  2021        PMID: 34194050      PMCID: PMC8983056          DOI: 10.1038/s41592-021-01186-4

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   47.990


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  9 in total

1.  BigBrain: an ultrahigh-resolution 3D human brain model.

Authors:  Katrin Amunts; Claude Lepage; Louis Borgeat; Hartmut Mohlberg; Timo Dickscheid; Marc-Étienne Rousseau; Sebastian Bludau; Pierre-Louis Bazin; Lindsay B Lewis; Ana-Maria Oros-Peusquens; Nadim J Shah; Thomas Lippert; Karl Zilles; Alan C Evans
Journal:  Science       Date:  2013-06-21       Impact factor: 47.728

2.  Fragility and volatility of structural hubs in the human connectome.

Authors:  Leonardo L Gollo; James A Roberts; Vanessa L Cropley; Maria A Di Biase; Christos Pantelis; Andrew Zalesky; Michael Breakspear
Journal:  Nat Neurosci       Date:  2018-07-23       Impact factor: 24.884

3.  Predicting regional neurodegeneration from the healthy brain functional connectome.

Authors:  Juan Zhou; Efstathios D Gennatas; Joel H Kramer; Bruce L Miller; William W Seeley
Journal:  Neuron       Date:  2012-03-21       Impact factor: 17.173

4.  Assessment of Neurobiological Mechanisms of Cortical Thinning During Childhood and Adolescence and Their Implications for Psychiatric Disorders.

Authors:  Nadine Parker; Yash Patel; Andrea P Jackowski; Pedro M Pan; Giovanni Abrahao Salum; Zdenka Pausova; Tomáš Paus
Journal:  JAMA Psychiatry       Date:  2020-11-01       Impact factor: 25.911

Review 5.  The Human Connectome Project: a data acquisition perspective.

Authors:  D C Van Essen; K Ugurbil; E Auerbach; D Barch; T E J Behrens; R Bucholz; A Chang; L Chen; M Corbetta; S W Curtiss; S Della Penna; D Feinberg; M F Glasser; N Harel; A C Heath; L Larson-Prior; D Marcus; G Michalareas; S Moeller; R Oostenveld; S E Petersen; F Prior; B L Schlaggar; S M Smith; A Z Snyder; J Xu; E Yacoub
Journal:  Neuroimage       Date:  2012-02-17       Impact factor: 6.556

6.  An anatomically comprehensive atlas of the adult human brain transcriptome.

Authors:  Michael J Hawrylycz; Ed S Lein; Angela L Guillozet-Bongaarts; Elaine H Shen; Lydia Ng; Jeremy A Miller; Louie N van de Lagemaat; Kimberly A Smith; Amanda Ebbert; Zackery L Riley; Chris Abajian; Christian F Beckmann; Amy Bernard; Darren Bertagnolli; Andrew F Boe; Preston M Cartagena; M Mallar Chakravarty; Mike Chapin; Jimmy Chong; Rachel A Dalley; Barry David Daly; Chinh Dang; Suvro Datta; Nick Dee; Tim A Dolbeare; Vance Faber; David Feng; David R Fowler; Jeff Goldy; Benjamin W Gregor; Zeb Haradon; David R Haynor; John G Hohmann; Steve Horvath; Robert E Howard; Andreas Jeromin; Jayson M Jochim; Marty Kinnunen; Christopher Lau; Evan T Lazarz; Changkyu Lee; Tracy A Lemon; Ling Li; Yang Li; John A Morris; Caroline C Overly; Patrick D Parker; Sheana E Parry; Melissa Reding; Joshua J Royall; Jay Schulkin; Pedro Adolfo Sequeira; Clifford R Slaughterbeck; Simon C Smith; Andy J Sodt; Susan M Sunkin; Beryl E Swanson; Marquis P Vawter; Derric Williams; Paul Wohnoutka; H Ronald Zielke; Daniel H Geschwind; Patrick R Hof; Stephen M Smith; Christof Koch; Seth G N Grant; Allan R Jones
Journal:  Nature       Date:  2012-09-20       Impact factor: 49.962

7.  Local vulnerability and global connectivity jointly shape neurodegenerative disease propagation.

Authors:  Ying-Qiu Zheng; Yu Zhang; Yvonne Yau; Yashar Zeighami; Kevin Larcher; Bratislav Misic; Alain Dagher
Journal:  PLoS Biol       Date:  2019-11-21       Impact factor: 8.029

8.  Network-based atrophy modeling in the common epilepsies: A worldwide ENIGMA study.

Authors:  Sara Larivière; Raúl Rodríguez-Cruces; Jessica Royer; Maria Eugenia Caligiuri; Antonio Gambardella; Luis Concha; Simon S Keller; Fernando Cendes; Clarissa Yasuda; Leonardo Bonilha; Ezequiel Gleichgerrcht; Niels K Focke; Martin Domin; Felix von Podewills; Soenke Langner; Christian Rummel; Roland Wiest; Pascal Martin; Raviteja Kotikalapudi; Terence J O'Brien; Benjamin Sinclair; Lucy Vivash; Patricia M Desmond; Saud Alhusaini; Colin P Doherty; Gianpiero L Cavalleri; Norman Delanty; Reetta Kälviäinen; Graeme D Jackson; Magdalena Kowalczyk; Mario Mascalchi; Mira Semmelroch; Rhys H Thomas; Hamid Soltanian-Zadeh; Esmaeil Davoodi-Bojd; Junsong Zhang; Matteo Lenge; Renzo Guerrini; Emanuele Bartolini; Khalid Hamandi; Sonya Foley; Bernd Weber; Chantal Depondt; Julie Absil; Sarah J A Carr; Eugenio Abela; Mark P Richardson; Orrin Devinsky; Mariasavina Severino; Pasquale Striano; Domenico Tortora; Sean N Hatton; Sjoerd B Vos; John S Duncan; Christopher D Whelan; Paul M Thompson; Sanjay M Sisodiya; Andrea Bernasconi; Angelo Labate; Carrie R McDonald; Neda Bernasconi; Boris C Bernhardt
Journal:  Sci Adv       Date:  2020-11-18       Impact factor: 14.136

9.  Subcortical Brain Volume, Regional Cortical Thickness, and Cortical Surface Area Across Disorders: Findings From the ENIGMA ADHD, ASD, and OCD Working Groups.

Authors:  Premika S W Boedhoe; Daan van Rooij; Martine Hoogman; Jos W R Twisk; Lianne Schmaal; Yoshinari Abe; Pino Alonso; Stephanie H Ameis; Anatoly Anikin; Alan Anticevic; Celso Arango; Paul D Arnold; Philip Asherson; Francesca Assogna; Guillaume Auzias; Tobias Banaschewski; Alexander Baranov; Marcelo C Batistuzzo; Sarah Baumeister; Ramona Baur-Streubel; Marlene Behrmann; Mark A Bellgrove; Francesco Benedetti; Jan C Beucke; Joseph Biederman; Irene Bollettini; Anushree Bose; Janita Bralten; Ivanei E Bramati; Daniel Brandeis; Silvia Brem; Brian P Brennan; Geraldo F Busatto; Sara Calderoni; Anna Calvo; Rosa Calvo; Francisco X Castellanos; Mara Cercignani; Tiffany M Chaim-Avancini; Kaylita C Chantiluke; Yuqi Cheng; Kang Ik K Cho; Anastasia Christakou; David Coghill; Annette Conzelmann; Ana I Cubillo; Anders M Dale; Sara Dallaspezia; Eileen Daly; Damiaan Denys; Christine Deruelle; Adriana Di Martino; Ilan Dinstein; Alysa E Doyle; Sarah Durston; Eric A Earl; Christine Ecker; Stefan Ehrlich; Benjamin A Ely; Jeffrey N Epstein; Thomas Ethofer; Damien A Fair; Andreas J Fallgatter; Stephen V Faraone; Jennifer Fedor; Xin Feng; Jamie D Feusner; Jackie Fitzgerald; Kate D Fitzgerald; Jean-Paul Fouche; Christine M Freitag; Egill A Fridgeirsson; Thomas Frodl; Matt C Gabel; Louise Gallagher; Tinatin Gogberashvili; Ilaria Gori; Patricia Gruner; Deniz A Gürsel; Shlomi Haar; Jan Haavik; Geoffrey B Hall; Neil A Harrison; Catharina A Hartman; Dirk J Heslenfeld; Yoshiyuki Hirano; Pieter J Hoekstra; Marcelo Q Hoexter; Sarah Hohmann; Marie F Høvik; Hao Hu; Chaim Huyser; Neda Jahanshad; Maria Jalbrzikowski; Anthony James; Joost Janssen; Fern Jaspers-Fayer; Terry L Jernigan; Dmitry Kapilushniy; Bernd Kardatzki; Georgii Karkashadze; Norbert Kathmann; Christian Kaufmann; Clare Kelly; Sabin Khadka; Joseph A King; Kathrin Koch; Gregor Kohls; Kerstin Konrad; Masaru Kuno; Jonna Kuntsi; Gerd Kvale; Jun Soo Kwon; Luisa Lázaro; Sara Lera-Miguel; Klaus-Peter Lesch; Liesbeth Hoekstra; Yanni Liu; Christine Lochner; Mario R Louza; Beatriz Luna; Astri J Lundervold; Charles B Malpas; Paulo Marques; Rachel Marsh; Ignacio Martínez-Zalacaín; David Mataix-Cols; Paulo Mattos; Hazel McCarthy; Jane McGrath; Mitul A Mehta; José M Menchón; Maarten Mennes; Mauricio Moller Martinho; Pedro S Moreira; Astrid Morer; Pedro Morgado; Filippo Muratori; Clodagh M Murphy; Declan G M Murphy; Akiko Nakagawa; Takashi Nakamae; Tomohiro Nakao; Leyla Namazova-Baranova; Janardhanan C Narayanaswamy; Rosa Nicolau; Joel T Nigg; Stephanie E Novotny; Erika L Nurmi; Eileen Oberwelland Weiss; Ruth L O'Gorman Tuura; Kirsten O'Hearn; Joseph O'Neill; Jaap Oosterlaan; Bob Oranje; Yannis Paloyelis; Mara Parellada; Paul Pauli; Chris Perriello; John Piacentini; Fabrizio Piras; Federica Piras; Kerstin J Plessen; Olga Puig; J Antoni Ramos-Quiroga; Y C Janardhan Reddy; Andreas Reif; Liesbeth Reneman; Alessandra Retico; Pedro G P Rosa; Katya Rubia; Oana Georgiana Rus; Yuki Sakai; Anouk Schrantee; Lena Schwarz; Lizanne J S Schweren; Jochen Seitz; Philip Shaw; Devon Shook; Tim J Silk; H Blair Simpson; Norbert Skokauskas; Juan Carlos Soliva Vila; Anastasia Solovieva; Noam Soreni; Carles Soriano-Mas; Gianfranco Spalletta; Emily R Stern; Michael C Stevens; S Evelyn Stewart; Gustavo Sudre; Philip R Szeszko; Leanne Tamm; Margot J Taylor; David F Tolin; Michela Tosetti; Fernanda Tovar-Moll; Aki Tsuchiyagaito; Theo G M van Erp; Guido A van Wingen; Alasdair Vance; Ganesan Venkatasubramanian; Oscar Vilarroya; Yolanda Vives-Gilabert; Georg G von Polier; Susanne Walitza; Gregory L Wallace; Zhen Wang; Thomas Wolfers; Yuliya N Yoncheva; Je-Yeon Yun; Marcus V Zanetti; Fengfeng Zhou; Georg C Ziegler; Kathrin C Zierhut; Marcel P Zwiers; Paul M Thompson; Dan J Stein; Jan Buitelaar; Barbara Franke; Odile A van den Heuvel
Journal:  Am J Psychiatry       Date:  2020-06-16       Impact factor: 18.112

  9 in total
  12 in total

1.  Integrating neuroimaging and gene expression data using the imaging transcriptomics toolbox.

Authors:  Alessio Giacomel; Daniel Martins; Matteo Frigo; Federico Turkheimer; Steven C R Williams; Ottavia Dipasquale; Mattia Veronese
Journal:  STAR Protoc       Date:  2022-04-15

Review 2.  ENIGMA-Sleep: Challenges, opportunities, and the road map.

Authors:  Masoud Tahmasian; André Aleman; Ole A Andreassen; Zahra Arab; Marion Baillet; Francesco Benedetti; Tom Bresser; Joanna Bright; Michael W L Chee; Daphne Chylinski; Wei Cheng; Michele Deantoni; Martin Dresler; Simon B Eickhoff; Claudia R Eickhoff; Torbjørn Elvsåshagen; Jianfeng Feng; Jessica C Foster-Dingley; Habib Ganjgahi; Hans J Grabe; Nynke A Groenewold; Tiffany C Ho; Seung Bong Hong; Josselin Houenou; Benson Irungu; Neda Jahanshad; Habibolah Khazaie; Hosung Kim; Ekaterina Koshmanova; Desi Kocevska; Peter Kochunov; Oti Lakbila-Kamal; Jeanne Leerssen; Meng Li; Annemarie I Luik; Vincenzo Muto; Justinas Narbutas; Gustav Nilsonne; Victoria S O'Callaghan; Alexander Olsen; Ricardo S Osorio; Sara Poletti; Govinda Poudel; Joyce E Reesen; Liesbeth Reneman; Mathilde Reyt; Dieter Riemann; Ivana Rosenzweig; Masoumeh Rostampour; Amin Saberi; Julian Schiel; Christina Schmidt; Anouk Schrantee; Emma Sciberras; Tim J Silk; Kang Sim; Hanne Smevik; Jair C Soares; Kai Spiegelhalder; Dan J Stein; Puneet Talwar; Sandra Tamm; Giana L Teresi; Sofie L Valk; Eus Van Someren; Gilles Vandewalle; Maxime Van Egroo; Henry Völzke; Martin Walter; Rick Wassing; Frederik D Weber; Antoine Weihs; Lars Tjelta Westlye; Margaret J Wright; Mon-Ju Wu; Nathalia Zak; Mojtaba Zarei
Journal:  J Sleep Res       Date:  2021-04-28       Impact factor: 3.981

Review 3.  Cross disorder comparisons of brain structure in schizophrenia, bipolar disorder, major depressive disorder, and 22q11.2 deletion syndrome: A review of ENIGMA findings.

Authors:  Eun-Jin Cheon; Carrie E Bearden; Daqiang Sun; Christopher R K Ching; Ole A Andreassen; Lianne Schmaal; Dick J Veltman; Sophia I Thomopoulos; Peter Kochunov; Neda Jahanshad; Paul M Thompson; Jessica A Turner; Theo G M van Erp
Journal:  Psychiatry Clin Neurosci       Date:  2022-02-26       Impact factor: 12.145

4.  Statistical testing in transcriptomic-neuroimaging studies: A how-to and evaluation of methods assessing spatial and gene specificity.

Authors:  Yongbin Wei; Siemon C de Lange; Rory Pijnenburg; Lianne H Scholtens; Dirk Jan Ardesch; Kyoko Watanabe; Danielle Posthuma; Martijn P van den Heuvel
Journal:  Hum Brain Mapp       Date:  2021-12-04       Impact factor: 5.038

5.  Standardizing workflows in imaging transcriptomics with the abagen toolbox.

Authors:  Ross D Markello; Aurina Arnatkeviciute; Jean-Baptiste Poline; Ben D Fulcher; Alex Fornito; Bratislav Misic
Journal:  Elife       Date:  2021-11-16       Impact factor: 8.140

6.  Structural network alterations in focal and generalized epilepsy assessed in a worldwide ENIGMA study follow axes of epilepsy risk gene expression.

Authors:  Sara Larivière; Jessica Royer; Raúl Rodríguez-Cruces; Casey Paquola; Maria Eugenia Caligiuri; Antonio Gambardella; Luis Concha; Simon S Keller; Fernando Cendes; Clarissa L Yasuda; Leonardo Bonilha; Ezequiel Gleichgerrcht; Niels K Focke; Martin Domin; Felix von Podewills; Soenke Langner; Christian Rummel; Roland Wiest; Pascal Martin; Raviteja Kotikalapudi; Terence J O'Brien; Benjamin Sinclair; Lucy Vivash; Patricia M Desmond; Elaine Lui; Anna Elisabetta Vaudano; Stefano Meletti; Manuela Tondelli; Saud Alhusaini; Colin P Doherty; Gianpiero L Cavalleri; Norman Delanty; Reetta Kälviäinen; Graeme D Jackson; Magdalena Kowalczyk; Mario Mascalchi; Mira Semmelroch; Rhys H Thomas; Hamid Soltanian-Zadeh; Esmaeil Davoodi-Bojd; Junsong Zhang; Gavin P Winston; Aoife Griffin; Aditi Singh; Vijay K Tiwari; Barbara A K Kreilkamp; Matteo Lenge; Renzo Guerrini; Khalid Hamandi; Sonya Foley; Theodor Rüber; Bernd Weber; Chantal Depondt; Julie Absil; Sarah J A Carr; Eugenio Abela; Mark P Richardson; Orrin Devinsky; Mariasavina Severino; Pasquale Striano; Domenico Tortora; Erik Kaestner; Sean N Hatton; Sjoerd B Vos; Lorenzo Caciagli; John S Duncan; Christopher D Whelan; Paul M Thompson; Sanjay M Sisodiya; Andrea Bernasconi; Angelo Labate; Carrie R McDonald; Neda Bernasconi; Boris C Bernhardt
Journal:  Nat Commun       Date:  2022-07-27       Impact factor: 17.694

7.  Local molecular and global connectomic contributions to cross-disorder cortical abnormalities.

Authors:  Justine Y Hansen; Golia Shafiei; Jacob W Vogel; Kelly Smart; Carrie E Bearden; Martine Hoogman; Barbara Franke; Daan van Rooij; Jan Buitelaar; Carrie R McDonald; Sanjay M Sisodiya; Lianne Schmaal; Dick J Veltman; Odile A van den Heuvel; Dan J Stein; Theo G M van Erp; Christopher R K Ching; Ole A Andreassen; Tomas Hajek; Nils Opel; Gemma Modinos; André Aleman; Ysbrand van der Werf; Neda Jahanshad; Sophia I Thomopoulos; Paul M Thompson; Richard E Carson; Alain Dagher; Bratislav Misic
Journal:  Nat Commun       Date:  2022-08-10       Impact factor: 17.694

8.  Multiscale neural gradients reflect transdiagnostic effects of major psychiatric conditions on cortical morphology.

Authors:  Matthias Kirschner; Boris C Bernhardt; Bo-Yong Park; Valeria Kebets; Sara Larivière; Meike D Hettwer; Casey Paquola; Daan van Rooij; Jan Buitelaar; Barbara Franke; Martine Hoogman; Lianne Schmaal; Dick J Veltman; Odile A van den Heuvel; Dan J Stein; Ole A Andreassen; Christopher R K Ching; Jessica A Turner; Theo G M van Erp; Alan C Evans; Alain Dagher; Sophia I Thomopoulos; Paul M Thompson; Sofie L Valk
Journal:  Commun Biol       Date:  2022-09-27

9.  Event-based modeling in temporal lobe epilepsy demonstrates progressive atrophy from cross-sectional data.

Authors:  Seymour M Lopez; Leon M Aksman; Neil P Oxtoby; Sjoerd B Vos; Jun Rao; Erik Kaestner; Saud Alhusaini; Marina Alvim; Benjamin Bender; Andrea Bernasconi; Neda Bernasconi; Boris Bernhardt; Leonardo Bonilha; Lorenzo Caciagli; Benoit Caldairou; Maria Eugenia Caligiuri; Angels Calvet; Fernando Cendes; Luis Concha; Estefania Conde-Blanco; Esmaeil Davoodi-Bojd; Christophe de Bézenac; Norman Delanty; Patricia M Desmond; Orrin Devinsky; Martin Domin; John S Duncan; Niels K Focke; Sonya Foley; Francesco Fortunato; Marian Galovic; Antonio Gambardella; Ezequiel Gleichgerrcht; Renzo Guerrini; Khalid Hamandi; Victoria Ives-Deliperi; Graeme D Jackson; Neda Jahanshad; Simon S Keller; Peter Kochunov; Raviteja Kotikalapudi; Barbara A K Kreilkamp; Angelo Labate; Sara Larivière; Matteo Lenge; Elaine Lui; Charles Malpas; Pascal Martin; Mario Mascalchi; Sarah E Medland; Stefano Meletti; Marcia E Morita-Sherman; Thomas W Owen; Mark Richardson; Antonella Riva; Theodor Rüber; Ben Sinclair; Hamid Soltanian-Zadeh; Dan J Stein; Pasquale Striano; Peter N Taylor; Sophia I Thomopoulos; Paul M Thompson; Manuela Tondelli; Anna Elisabetta Vaudano; Lucy Vivash; Yujiang Wang; Bernd Weber; Christopher D Whelan; Roland Wiest; Gavin P Winston; Clarissa Lin Yasuda; Carrie R McDonald; Daniel C Alexander; Sanjay M Sisodiya; Andre Altmann
Journal:  Epilepsia       Date:  2022-06-25       Impact factor: 6.740

10.  Topographic divergence of atypical cortical asymmetry and atrophy patterns in temporal lobe epilepsy.

Authors:  Bo-Yong Park; Sara Larivière; Raul Rodríguez-Cruces; Jessica Royer; Shahin Tavakol; Yezhou Wang; Lorenzo Caciagli; Maria Eugenia Caligiuri; Antonio Gambardella; Luis Concha; Simon S Keller; Fernando Cendes; Marina K M Alvim; Clarissa Yasuda; Leonardo Bonilha; Ezequiel Gleichgerrcht; Niels K Focke; Barbara A K Kreilkamp; Martin Domin; Felix von Podewils; Soenke Langner; Christian Rummel; Michael Rebsamen; Roland Wiest; Pascal Martin; Raviteja Kotikalapudi; Benjamin Bender; Terence J O'Brien; Meng Law; Benjamin Sinclair; Lucy Vivash; Patrick Kwan; Patricia M Desmond; Charles B Malpas; Elaine Lui; Saud Alhusaini; Colin P Doherty; Gianpiero L Cavalleri; Norman Delanty; Reetta Kälviäinen; Graeme D Jackson; Magdalena Kowalczyk; Mario Mascalchi; Mira Semmelroch; Rhys H Thomas; Hamid Soltanian-Zadeh; Esmaeil Davoodi-Bojd; Junsong Zhang; Matteo Lenge; Renzo Guerrini; Emanuele Bartolini; Khalid Hamandi; Sonya Foley; Bernd Weber; Chantal Depondt; Julie Absil; Sarah J A Carr; Eugenio Abela; Mark P Richardson; Orrin Devinsky; Mariasavina Severino; Pasquale Striano; Costanza Parodi; Domenico Tortora; Sean N Hatton; Sjoerd B Vos; John S Duncan; Marian Galovic; Christopher D Whelan; Núria Bargalló; Jose Pariente; Estefania Conde-Blanco; Anna Elisabetta Vaudano; Manuela Tondelli; Stefano Meletti; Xiang-Zhen Kong; Clyde Francks; Simon E Fisher; Benoit Caldairou; Mina Ryten; Angelo Labate; Sanjay M Sisodiya; Paul M Thompson; Carrie R McDonald; Andrea Bernasconi; Neda Bernasconi; Boris C Bernhardt
Journal:  Brain       Date:  2022-05-24       Impact factor: 15.255

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