| Literature DB >> 34192049 |
Jennifer A Croker1, Robin Patel2, Kenneth S Campbell3, Marietta Barton-Baxter3, Shannon Wallet4, Gary S Firestein5, Robert P Kimberly1, Olivier Elemento6.
Abstract
Biospecimen repositories play a vital role in enabling investigation of biologic mechanisms, identification of disease-related biomarkers, advances in diagnostic assays, recognition of microbial evolution, and characterization of new therapeutic targets for intervention. They rely on the complex integration of scientific need, regulatory oversight, quality control in collection, processing and tracking, and linkage to robust phenotype information. The COVID-19 pandemic amplified many of these considerations and illuminated new challenges, all while academic health centers were trying to adapt to unprecedented clinical demands and heightened research constraints not witnessed in over 100 years. The outbreak demanded rapid understanding of SARS-CoV-2 to develop diagnostics and therapeutics, prompting the immediate need for access to high quality, well-characterized COVID-19-associated biospecimens. We surveyed 60 Clinical and Translational Science Award (CTSA) hubs to better understand the strategies and barriers encountered in biobanking before and in response to the COVID-19 pandemic. Feedback revealed a major shift in biorepository model, specimen-acquisition and consent process from a combination of investigator-initiated and institutional protocols to an enterprise-serving strategy. CTSA hubs were well equipped to leverage established capacities and expertise to quickly respond to the scientific needs of this crisis through support of institutional approaches in biorepository management. © The Association for Clinical and Translational Science 2021.Entities:
Keywords: Biorepository; COVID-19; CTSA; SARS-CoV-2; biobanking IRB; informed consent; regulatory; sample; specimen
Year: 2021 PMID: 34192049 PMCID: PMC8134891 DOI: 10.1017/cts.2021.6
Source DB: PubMed Journal: J Clin Transl Sci ISSN: 2059-8661
Fig. 1.Shifts in Biorepository Approaches before (pre-COVID-19) and in specific response to COVID-19. A. Comparison of the approaches in biorepository models (investigator-initiated, enterprise, hybrid). B. Observed shifts in participant consent and specimen acquisition. (Percentages reflect fraction of total survey respondents; weight of lines represents relative proportion of the shift).
Fig. 2.Changes made to biospecimen acquisition and banking consenting procedures due to COVID-19. CTSA, Clinical and Translational Science Awards.
Primary approach for COVID-19 specimen governance, prioritized use, and financial support
| COVID-19-specific [(%), # CTSA sites] | |
|---|---|
|
| |
| Creation of a governance group, which has guided the acquisition of specimens and helped to prioritize sample allocation | (73%), 43 |
| Created a scientific advisory group to anticipate specimen needs and obtain them proactively (e.g., pediatric samples, health care workers, in-patient, out-patient, non-patient research participants) | (46%), 27 |
|
| |
| Academic Collaborators | (86%), 51 |
| Academic Consortia | (66%), 39 |
| Industry Collaborators | (24%), 14 |
|
| |
| Investigator Grants or charge | (73%), 43 |
| Center Grants and Mechanisms (e.g., CTSA) | (69%), 41 |
| Funds from the School of Medicine, Health System or other Schools | (68%), 40 |
| Philanthropy | (47%), 28 |
CTSA, Clinical and Translational Science Awards.
Fig. 3.Major obstacles institutions encountered in enabling biorepository activities to support COVID-19 related research. “Other” category includes issues such as lack of funding, overwhelming demand, absence of biosafety level capacity, access to patients, and staffing challenges. CTSA, Clinical and Translational Science Award; IRB, Institutional Review Board.
COVID-19 biospecimen collection strategy to meet research opportunities
| Specimen Type | Experimental Use |
|---|---|
| Nasopharyngeal swabs, mid-turbinate swabs, anterior nares swabs, saliva, endotracheal aspirates, sputum, bronchoalveolar lavage fluid | Development, validation and verification of diagnostic tests (e.g., RT-PCR, Loop-mediated isothermal amplification (LAMP), antigen detection) and various specimen-types (to ease supply chain shortages, minimize risk to healthcare providers and increase patient satisfaction), studies of viral kinetics over time, viral evolution studies (i.e., through sequencing), infectiousness/contagiousness, host response markers, microbiome studies, etc. |
| Blood | Array-based genotyping, whole genome sequencing, exome sequencing |
| PBMC | Immunophenotyping, CyTOF (mass cytometry), single cell RNAseq, live cell populations, antibody repertoire |
| Serum/plasma | Proteomics, metabolomics, antibody, coagulation studies |
| Platelets | Coagulation studies |
| Autopsy | Multiplex imaging (imaging mass cytometry) |
| Fecal swabs, skin | Microbiome |
PBMC, peripheral blood mononuclear cell.