| Literature DB >> 34189083 |
Constanza Gómez de Oña1, Marta E Alvarez-Argüelles1, Susana Rojo-Alba1, Helena Casares2, Mireia Arroyo2, Julián Rodríguez2, María de Oña1, Santiago Melón1.
Abstract
BACKGROUND: Analyze possible relationships between HAdV and markers for inflammation, specifically the C-reactive protein (CRP) and procalcitonin (PCT) tests, along with other haematological markers.Entities:
Keywords: Adenovirus; C-reactive protein; procalcitonin; respiratory infections
Year: 2021 PMID: 34189083 PMCID: PMC8193001 DOI: 10.21037/tp-20-333
Source DB: PubMed Journal: Transl Pediatr ISSN: 2224-4336
Primers and probes used in the detection of respiratory viruses in each amplification mixture
| Virus | Name* | Sequence (5’ > 3’) |
|---|---|---|
| IFVA | IFVA-TR-F* | GACCRATCCTGTCACCTCTGAC |
| IFVA-TR-R* | AGGGCATTYTGGACAAAKCGTA | |
| IFVA-FAM | TGCAGTCCTCGCTCACTGGGCAG | |
| IFVB | IFVB-TR-F | AACATGGTAGTGAAACTGGGAA |
| IFVB-TR-R | CAGCATGCGCATTTTGGAT | |
| IFVB-NED | ATAACCAGATGATGGTCAAA | |
| RSV | RSVA-TR-F | GCCAGTGGCATTGCTGTAT |
| RSVA-TR-R | CTGACTACGGCCTTGTTTGT | |
| RSVB-TR-F | GCAAGTGGTATAGCTGTAT | |
| RSVB-TR-R | CTGACTACAGCTTTGTTTGT | |
| RSV-VIC | AGAAGTGAACAAGATCAA | |
| PIV 1-3 | PIV 1-3-TR-F | CATGTMMATGCAACWGGMWTA |
| PIV 1-3-TR-R | TGAWGMWGCCCAGATRACYAA | |
| PIV 1-3-FAM | TTTGYTATCCTTTAATGGAT | |
| hMPV | hMPV-TR-F | CGCACTATGTGATTTTATGGAGA |
| hMPV-TR-R | GCTTCAACAGTAGCTGACTCACT | |
| hMPV-NED | AAGAACACACCTGTTACAATA | |
| HCoV | HCoV-TR-F | TATGTTGCWTTRCARACTGATGT |
| HCoV 12-TRR | TGMAGTTTGTGTAATAGCATCAC | |
| HCoV 34-TRF | GGCTGTATGATGAATGTTGCTGT | |
| HCoV 34-TRR | GAMCCTGCACCTAAATGCMAA | |
| HCoV-VIC | CAAGAAAATCAGAAAATT | |
| Picornavirus | Picor-TR-F | GCCCCTGAATGYGGCTAA |
| (Rhinovirus & Enterovirus) | Picor-TR-A1 | GAIACYTGWGCICCCAT |
| Picor-TR-A2 | ATTGTCACCATAAGCAGCCA | |
| Picor-VIC | ACTTTGGGTGTCCGTGTT | |
| HAdV | HAdV2-TR-F | CCAGGACGCCTCGGAGTA |
| HAdV2-TR-R | AAACTTGTTATTCAGGCTGAAGT | |
| HAdV4-TR-F | GGACAGGACGCTTCGGAGTA | |
| HAdV 4-TR-R | CTTGTTCCCCAGACTGAAGTAGT | |
| HAdV2-NED | AGTTTGCCCGCGCCACCG | |
| HAdV4-NED | CAGTTCGCCCGYGCMACAG | |
| β-globin | Beta-TR-F | ACACAACTGTGTTCACTAGC |
| Beta-TR-R | CCAACTTCATCCACGTTCACC | |
| Beta-FAM | TGCATCTGACTCCTGAGGA |
*Primers are indicated using a shortened form of the name of the virus and the letters TR followed by F (Forward) or R (Reverse). The probes are identified using a shortened version of the virus name followed by the fluorophore that it carries (FAM, NED or VIC).
Figure 1Weekly percentage of the most frequently identified viruses.
Most frequent clinical symptoms on the basis of age of child and presence or absence of viral infection
| Infection | Fever | URTI | LRTI | Suspected Flu |
|---|---|---|---|---|
| Infection HAdV | ||||
| 0–5 years n=128 | 69 (53.9%) | 47 (36.7%) | 6 (4.7%) | 6 (4.7%) |
| 6–14 years n=20 | 10 (50.0%) | 6 (30%) | 1 (5.0%) | 3 (15.0%) |
| Infection other RVs | ||||
| 0–5 years n=129 | 79 (61.4%) | 34 (26.3%) | 9 (7.0%) | 7 (5.4%) |
| 6–14 years n= 26 | 12 (46.1%) | 8 (30.7%) | 0 | 6 (23.1%) |
| No viral infection | ||||
| 0–5 years n=121 | 74 (61.1%) | 33 (27.3%) | 7 (5.7%) | 7 (5.7%) |
| 6–14 years n= 63 | 38 (60.3%) | 18 (28.6%) | 0 | 7 (11.1%) |
URTI, upper respiratory tract infection; LRTI, lower respiratory tract infection.
Viral load in cases of HAdV infection and infection by other respiratory viruses
| HAdV | n | VL HAdV/RVs | 95% CI |
|---|---|---|---|
| HAdV >500 copies of DNA/103 cells (n=127) | |||
| HAdV single infection | 101 | 6.7±1.7 (2.8–10.4) | 6.3–7.0 |
| HAdV & other RVs | 26 | 5.5±1.2 (2.9–7.6) | 5.1–5.9 |
| HAdV <500 copies of DNA/103cells (n=21) | |||
| HAdV single infection | 13 | 1.56±0.7 (0.7–2.7) | 1.1–2.0 |
| HAdV & other RVs | 8 | 1.90±0.6 (0.7–2.6) | 1.4–2.4 |
| Other RVs >500 copies of DNA/103 cells (n=134) | |||
| RVs single infection | 118 | 5.1±1.3 (2.9–9.5) | 4.8–5.3 |
| Coinfection | 16 | 4.4±1.6 (2.3–7.9) | 3.7–5.1 |
| RVs <500 copies of DNA/103 cells (n=21) | 1.9±0.5 (1–2.4) | 1.7–2.1 |
VL, viral load; RVs, respiratory viruses other than HAdV.
Figure 2Percentage of PCT and CRP according to type of viral infection or no viral infection. *P<0.05.
Distribution of cases on the basis of whether viral infection was found to be present or not, and type of infection if so, and how this relates to alteration in biomarkers
| Tipo de infección | PCT >0.5 ng/mL | CRP >1 mg/dL | Leukocytosis | Neutrophilia | Lymphocytosis |
|---|---|---|---|---|---|
| ADV >500 copies de DNA /103 cells (n=127) | 66 (52.0%)* | 112 (88.2%)* | 85 (66.9%) | 64 (50.4%) | 23 (18.1%) |
| ADV infección única (n=101) | 50 (49.5%) | 88 (87.1%) | 64 (63.4%) | 53 (52.5%) | 18 (17.8%) |
| ADV >500 & otros VRs (n=26) | 16 (61.5%) | 24 (92.3%) | 21 (80.8%) | 11 (42.3%) | 5 (19.2%) |
| Other RVs >500 copies de DNA/103 cells (n=134) | 34 (25.4%) | 77 (57.5%) | 80 (59.7%) | 55 (41%) | 48 (35.8%)* |
| IA, IB (n=47) | 13 (27.6%) | 23 (48.9%) | 12 (25.5%) | 20 (42.5%) | 15 (31.9%) |
| ETV (n=35) | 10 (28.6%) | 21 (60.0%) | 31 (88.5%)* | 18 (51.4%) | 10 (28.5%) |
| VRS (n=30) | 5 (16.6%) | 19 (63.3%) | 23 (76.6%) | 6 (20.0%) | 16 (53.3%) |
| CoV, HRV, hMPV, PIV (n=22) | 6 (27.2%) | 14 (63.6%) | 14 (63.6%) | 11 (50.0%) | 7 (31.8%) |
| No viral infection (n=184) | 39 (21.2%) | 121 (65.8%) | 112 (60.9%) | 103 (56.0%)* | 48 (26.1%) |
*statistically significant (P<0.05). PCT, procalcitonin; CRP, C reactive protein; HadV, Adenovirus; IFVA, IFVB, influenza A and B; ETV, enterovirus; RSV, respiratory syncytial virus; HcoV, coronovirus; HRV, rhinovirus; hMPV, metapneumovirus.
Figure 3ROC curve for plasma PCT (A) and CRP (B)
Figure 4Average ± standard deviation of viral load in HAdV infected children in terms of different levels of PCT (A) and CRP (B).
Biomarkers and hemograms of children where simultaneous cultures of virus and bacteria were carried out
| Type of infection | PCT >0.5 ng/mL | CRP >1 mg/dL | Leukocytosis | Neutrophilia | Lymphocytosis |
|---|---|---|---|---|---|
| Bacteria (n=16) | 3 (18.7%) | 14 (87.5%) | 14 (87.5%)* | 13 (81.2%) | 2 (11.1%) |
| HAdV without bacteria (n=45) | 27 (60.0%)* | 40 (88.9%) | 24 (53.3%) | 29 (64.4%) | 7 (15.9%) |
| Other RVs without bacteria (n=31) | 7 (22.5%) | 19 (61.3%)* | 20 (64.5%) | 19 (61.3%) | 5 (16.7%) |
| No viral infection (n=49) | 13 (26.5%) | 36 (73.5%) | 39 (79.6%) | 35 (71.4%) | 8 (16.3%) |
*statistically significant (P<0.05). PCT, procalcitonin; CRP, C-reactive protein; RVs, respiratory virus other than HAdV.