Literature DB >> 34188863

Relieving efforts in palm-tree tissue sampling for population genetics analyses.

Sebastian A Espinoza-Ulloa1,2.   

Abstract

The young leaves are the main source of nucleic acids for population genetic studies in palm-trees; however, the access to this tissue may be limited by specific features of each species. Using root tissues as an alternative source of nucleic acids could facilitate the sampling in large populations.This study tests root tissue viability as an alternative nucleic acid source (root versus. leaf) and explores different protocols (tissue storage and DNA extraction methods) to obtain high-quality DNA samples.The results showed no significant differences in DNA concentration (603.7 vs. 599.1 ng/μl) and quality ratios (A260/280:2.1 vs. 1.9, and A260/230:2.1 vs. 2.0) for the comparisons of tissue source (leaf vs. root) and DNA extraction method (manual vs. kit). For tissue storage method, DNA concentration was significantly higher for root tissues stored in 70% and 90% alcohol solutions (692.8 and 822.6 ng/μl, respectively) versus those obtained from leaf tissue (603.7 ng/μl); however, for the quality parameters, no differences were found.Results showed the effective potential of using root tissue as an alternative source for nucleic acids, which could facilitate population sampling of palm-tree species for future studies, and this methodological alternative could be applied to other plant systems with similar sampling challenges. ​.
© 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.

Entities:  

Keywords:  DNA methods; palm‐tree; population genetics; root tissue; sampling methods

Year:  2021        PMID: 34188863      PMCID: PMC8216967          DOI: 10.1002/ece3.7624

Source DB:  PubMed          Journal:  Ecol Evol        ISSN: 2045-7758            Impact factor:   2.912


  6 in total

1.  A simple and rapid method for the preparation of plant genomic DNA for PCR analysis.

Authors:  K Edwards; C Johnstone; C Thompson
Journal:  Nucleic Acids Res       Date:  1991-03-25       Impact factor: 16.971

2.  A fast, simple, and reliable high-yielding method for DNA extraction from different plant species.

Authors:  Raul Tapia-Tussell; Andres Quijano-Ramayo; Rafael Rojas-Herrera; Alfonso Larque-Saavedra; Daisy Perez-Brito
Journal:  Mol Biotechnol       Date:  2005-10       Impact factor: 2.695

3.  The shoot apical meristem of oil palm (Elaeis guineensis; Arecaceae): developmental progression and dynamics.

Authors:  Stefan Jouannic; Marc Lartaud; Jonathan Hervé; Myriam Collin; Yves Orieux; Jean-Luc Verdeil; James W Tregear
Journal:  Ann Bot       Date:  2011-02-07       Impact factor: 4.357

4.  A simple method for DNA extraction from mature date palm leaves: impact of sand grinding and composition of lysis buffer.

Authors:  Ibrahim A Arif; Mohammad A Bakir; Haseeb A Khan; Anis Ahamed; Ahmad H Al Farhan; Ali A Al Homaidan; Mohammad Al Sadoon; Ali H Bahkali; Mohammad Shobrak
Journal:  Int J Mol Sci       Date:  2010-09-08       Impact factor: 5.923

5.  Protein accumulation in leaves and roots associated with improved drought tolerance in creeping bentgrass expressing an ipt gene for cytokinin synthesis.

Authors:  Emily B Merewitz; Thomas Gianfagna; Bingru Huang
Journal:  J Exp Bot       Date:  2011-08-09       Impact factor: 6.992

6.  Extraction of high-quality DNA from ethanol-preserved tropical plant tissues.

Authors:  Eduardo A Bressan; Mônica L Rossi; Lee T S Gerald; Antonio Figueira
Journal:  BMC Res Notes       Date:  2014-04-24
  6 in total

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