Literature DB >> 34185310

Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into Peru.

Eduardo Juscamayta-López1,2, Dennis Carhuaricra2, David Tarazona1,2, Faviola Valdivia1, Nancy Rojas1, Lenin Maturrano2, Ronnie Gavilán1.   

Abstract

Peru has become one of the countries with the highest mortality rates from the current coronavirus disease 2019 (COVID-19) pandemic caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). To investigate early transmission events and the genomic diversity of SARS-CoV-2 isolates circulating in Peru in the early COVID-19 pandemic, we analyzed 3472 viral genomes, of which 149 were from Peru. Phylogenomic analysis revealed multiple and independent introductions of the virus likely from Europe and Asia, and high diversity of genetic lineages circulating in Peru. In addition, we found evidence for community-driven transmission of SARS-CoV-2 as suggested by clusters of related viruses found in patients living in different regions of Peru. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Entities:  

Keywords:  SARS-CoV-2; evolution; molecular epidemiology; phylogenomics; transmission; whole-genome sequencing

Year:  2021        PMID： 34185310     DOI： 10.1002/jmv.27167

Source DB:  PubMed          Journal:  J Med Virol        ISSN： 0146-6615            Impact factor:   2.327


  4 in total

1.  Confirmed Severe Acute Respiratory Syndrome Coronavirus 2 Reinfections After a Second Wave With Predominance of Lambda in Lima and Callao, Peru.

Authors:  Luis Pampa-Espinoza; Carlos Padilla-Rojas; Javier Silva-Valencia; Victor Jimenez-Vasquez; Iris Silva; Orson Mestanza; Priscila Lope Pari; Omar Cáceres; Henry Bailón-Calderón; Luis Bárcena-Flores; Marco Galarza; María García Mendoza; Ronnie Gavilán; Nancy Rojas Serrano; Miryam Palomino Rodriguez; Maribel Huaringa; Pamela Rios Monteza; Luis Ordoñez; Manuel Fernandez-Navarro; Natalia Vargas-Herrera; Lely Solari
Journal:  Open Forum Infect Dis       Date:  2022-03-16       Impact factor: 4.423

2.  Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil.

Authors:  Simone Kashima; Svetoslav N Slavov; Marta Giovanetti; Evandra S Rodrigues; José S L Patané; Vincent L Viala; Elaine V Santos; Mariane Evaristo; Loyze P O de Lima; Antonio J Martins; Claudia R Dos Santos Barros; Elaine C Marqueze; Pedro M M Garibaldi; Natasha N Ferreira; Glenda R Moraes; Ricardo A Brassaloti; Raquel L R C Cassano; Pilar D S C Mariani; João P Kitajima; David Schlesinger; Rafael S Bezerra; Patricia A Assato; Felipe A S da Costa; Mirele Daiana Poleti; Jessika C C Lesbon; Elisangela C Mattos; Cecilia A Banho; Lívia Sacchetto; Rejane M T Grotto; Jayme A Souza-Neto; Vagner Fonseca; Luiz C J de Alcantara; Maurício L Nogueira; Heidge Fukumasu; Luiz L Coutinho; Marcos Borges; Rodrigo T Calado; Maria C Elias; Sandra C Sampaio; Dimas T Covas
Journal:  J Med Virol       Date:  2021-10-20       Impact factor: 20.693

3.  Ethnobotanical Survey of Medicinal Plants Used in the Treatment of COVID-19 and Related Respiratory Infections in Ogbomosho South and North Local Government Areas, Oyo State, Nigeria.

Authors:  Christiana Adeyinka Odebunmi; Tomi Lois Adetunji; Ademola Emmanuel Adetunji; Ahmed Olatunde; Oluwatosin Esther Oluwole; Idowu Ayodeji Adewale; Abdulrasak Opeyemi Ejiwumi; Chinwenwa Esther Iheme; Taiwo Opeyemi Aremu
Journal:  Plants (Basel)       Date:  2022-10-10

4.  A Multiplex and Colorimetric Reverse Transcription Loop-Mediated Isothermal Amplification Assay for Sensitive and Rapid Detection of Novel SARS-CoV-2.

Authors:  Eduardo Juscamayta-López; Faviola Valdivia; Helen Horna; David Tarazona; Liza Linares; Nancy Rojas; Maribel Huaringa
Journal:  Front Cell Infect Microbiol       Date:  2021-06-29       Impact factor: 5.293
  4 in total

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