Literature DB >> 34184973

Emergence of the novel SARS-CoV-2 lineage VUI-NP13L and massive spread of P.2 in South Brazil.

Fernando Hayashi Sant'Anna1, Ana Paula Muterle Varela2, Janira Prichula2, Juliana Comerlato1, Carolina Baldisserotto Comerlato1, Vinicius Serafini Roglio1, Gerson Fernando Mendes Pereira3, Flávia Moreno3, Adriana Seixas2, Eliana Márcia Wendland1,4.   

Abstract

In this study, we analyzed 340 whole genomes of SARS-CoV-2, which were sampled between April and November 2020 in 33 cities of Rio Grande do Sul, South Brazil. We demonstrated the circulation of two novel emergent lineages, VUI-NP13L and VUI-NP13L-like, and five major lineages that had already been assigned (B.1.1.33, B.1.1.28, P.2, B.1.91, B.1.195). P.2 and VUI-NP13L demonstrated a massive spread in October 2020. Constant and consistent genomic surveillance is crucial to identify newly emerging SARS-CoV-2 lineages in Brazil and to guide decision making in the Brazilian Public Healthcare System.

Entities:  

Keywords:  Brazil; COVID-19; SARS-CoV-2 genomes; Severe acute respiratory syndrome coronavirus 2; VUI-NP13L

Year:  2021        PMID： 34184973     DOI： 10.1080/22221751.2021.1949948

Source DB:  PubMed          Journal:  Emerg Microbes Infect        ISSN： 2222-1751            Impact factor:   7.163


  6 in total

1.  Increased Abundance of Achromobacter xylosoxidans and Bacillus cereus in Upper Airway Transcriptionally Active Microbiome of COVID-19 Mortality Patients Indicates Role of Co-Infections in Disease Severity and Outcome.

Authors:  Priti Devi; Ranjeet Maurya; Priyanka Mehta; Uzma Shamim; Aanchal Yadav; Partha Chattopadhyay; Akshay Kanakan; Kriti Khare; Janani Srinivasa Vasudevan; Shweta Sahni; Pallavi Mishra; Akansha Tyagi; Sujeet Jha; Sandeep Budhiraja; Bansidhar Tarai; Rajesh Pandey
Journal:  Microbiol Spectr       Date:  2022-05-17

2.  Genomic epidemiology reveals the impact of national and international restrictions measures on the SARS-CoV-2 epidemic in Brazil.

Authors:  Marta Giovanetti; Svetoslav Nanev Slavov; Vagner Fonseca; Eduan Wilkinson; Houriiyah Tegally; José Salvatore Leister Patané; Vincent Louis Viala; James Emmanuel San; Evandra Strazza Rodrigues; Elaine Vieira Santos; Flavia Aburjaile; Joilson Xavier; Hegger Fritsch; Talita Emile Ribeiro Adelino; Felicidade Pereira; Arabela Leal; Felipe Campos de Melo Iani; Glauco de Carvalho Pereira; Cynthia Vazquez; Gladys Mercedes Estigarribia Sanabria; Elaine Cristina de Oliveira; Luiz Demarchi; Julio Croda; Rafael Dos Santos Bezerra; Loyze Paola Oliveira de Lima; Antonio Jorge Martins; Claudia Renata Dos Santos Barros; Elaine Cristina Marqueze; Jardelina de Souza Todao Bernardino; Debora Botequio Moretti; Ricardo Augusto Brassaloti; Raquel de Lello Rocha Campos Cassano; Pilar Drummond Sampaio Corrêa Mariani; João Paulo Kitajima; Bibiana Santos; Rodrigo Proto-Siqueira; Vlademir Vicente Cantarelli; Stephane Tosta; Vanessa Brandão Nardy; Luciana Reboredo de Oliveira da Silva; Marcela Kelly Astete Gómez; Jaqueline Gomes Lima; Adriana Aparecida Ribeiro; Natália Rocha Guimarães; Luiz Takao Watanabe; Luana Barbosa Da Silva; Raquel da Silva Ferreira; Mara Patricia F da Penha; María José Ortega; Andrea Gómez de la Fuente; Shirley Villalba; Juan Torales; María Liz Gamarra; Carolina Aquino; Gloria Patricia Martínez Figueredo; Wellington Santos Fava; Ana Rita C Motta-Castro; James Venturini; Sandra Maria do Vale Leone de Oliveira; Crhistinne Cavalheiro Maymone Gonçalves; Maria do Carmo Debur Rossa; Guilherme Nardi Becker; Mayra Marinho Presibella; Nelson Quallio Marques; Irina Nastassja Riediger; Sonia Raboni; Gabriela Mattoso Coelho; Allan Henrique Depieri Cataneo; Camila Zanluca; Claudia N Duarte Dos Santos; Patricia Akemi Assato; Felipe Allan da Silva da Costa; Mirele Daiana Poleti; Jessika Cristina Chagas Lesbon; Elisangela Chicaroni Mattos; Cecilia Artico Banho; Lívia Sacchetto; Marília Mazzi Moraes; Rejane Maria Tommasini Grotto; Jayme A Souza-Neto; Maurício Lacerda Nogueira; Heidge Fukumasu; Luiz Lehmann Coutinho; Rodrigo Tocantins Calado; Raul Machado Neto; Ana Maria Bispo de Filippis; Rivaldo Venancio da Cunha; Carla Freitas; Cassio Roberto Leonel Peterka; Cássia de Fátima Rangel Fernandes; Wildo Navegantes de Araújo; Rodrigo Fabiano do Carmo Said; Maria Almiron; Carlos Frederico Campelo de Albuquerque E Melo; José Lourenço; Tulio de Oliveira; Edward C Holmes; Ricardo Haddad; Sandra Coccuzzo Sampaio; Maria Carolina Elias; Simone Kashima; Luiz Carlos Junior de Alcantara; Dimas Tadeu Covas
Journal:  medRxiv       Date:  2022-03-28

3.  Tracking the turnover of SARS-CoV-2 VOCs Gamma to Delta in a Brazilian state (Minas Gerais) with a high-vaccination status.

Authors:  Paula L C Fonseca; Filipe R R Moreira; Rafael M de Souza; Natália R Guimarães; Nara O Carvalho; Talita E R Adelino; Hugo J Alves; Luige B Alvim; Darlan S Candido; Helena P Coelho; Alana V B Costa; Walyson C Costa; Alex F de Carvalho; Bruna W F de Faria; Aline B de Lima; Eneida S de Oliveira; Carolina S A de Souza; Fernanda G de Souza; Rillery C Dias; Victor E V Geddes; Igor P Godinho; Alessandro L Gonçalves; Karine L Lourenço; Rubens D M Magalhães; Frederico S V Malta; Eva L A Medeiros; Fernanda S Mendes; Pedro H B de P Mendes; Cristiane P T B Mendonça; Andre L Menezes; Diego Menezes; Mariane T Menezes; Lucyene Miguita; Rennan G Moreira; Renata B Peixoto; Daniel C Queiroz; Adriana A Ribeiro; Ana Paula de B Ribeiro; Juliana W Saliba; Hugo I Sato; Joice do P Silva; Natiely P Silva; Nuno R Faria; Santuza M R Teixeira; Flávio G da Fonseca; Ana Paula S M Fernandes; Danielle A G Zauli; José Nélio Januario; Jaqueline S de Oliveira; Felipe C de M Iani; Renato S de Aguiar; Renan P de Souza
Journal:  Virus Evol       Date:  2022-07-27

4.  Genomic epidemiology of the SARS-CoV-2 epidemic in Brazil.

Authors:  Marta Giovanetti; Svetoslav Nanev Slavov; Vagner Fonseca; Eduan Wilkinson; Houriiyah Tegally; José Salvatore Leister Patané; Vincent Louis Viala; Emmanuel James San; Evandra Strazza Rodrigues; Elaine Vieira Santos; Flavia Aburjaile; Joilson Xavier; Hegger Fritsch; Talita Emile Ribeiro Adelino; Felicidade Pereira; Arabela Leal; Felipe Campos de Melo Iani; Glauco de Carvalho Pereira; Cynthia Vazquez; Gladys Mercedes Estigarribia Sanabria; Elaine Cristina de Oliveira; Luiz Demarchi; Julio Croda; Rafael Dos Santos Bezerra; Loyze Paola Oliveira de Lima; Antonio Jorge Martins; Claudia Renata Dos Santos Barros; Elaine Cristina Marqueze; Jardelina de Souza Todao Bernardino; Debora Botequio Moretti; Ricardo Augusto Brassaloti; Raquel de Lello Rocha Campos Cassano; Pilar Drummond Sampaio Corrêa Mariani; João Paulo Kitajima; Bibiana Santos; Rodrigo Proto-Siqueira; Vlademir Vicente Cantarelli; Stephane Tosta; Vanessa Brandão Nardy; Luciana Reboredo de Oliveira da Silva; Marcela Kelly Astete Gómez; Jaqueline Gomes Lima; Adriana Aparecida Ribeiro; Natália Rocha Guimarães; Luiz Takao Watanabe; Luana Barbosa Da Silva; Raquel da Silva Ferreira; Mara Patricia F da Penha; María José Ortega; Andrea Gómez de la Fuente; Shirley Villalba; Juan Torales; María Liz Gamarra; Carolina Aquino; Gloria Patricia Martínez Figueredo; Wellington Santos Fava; Ana Rita C Motta-Castro; James Venturini; Sandra Maria do Vale Leone de Oliveira; Crhistinne Cavalheiro Maymone Gonçalves; Maria do Carmo Debur Rossa; Guilherme Nardi Becker; Mayra Presibella Giacomini; Nelson Quallio Marques; Irina Nastassja Riediger; Sonia Raboni; Gabriela Mattoso; Allan D Cataneo; Camila Zanluca; Claudia N Duarte Dos Santos; Patricia Akemi Assato; Felipe Allan da Silva da Costa; Mirele Daiana Poleti; Jessika Cristina Chagas Lesbon; Elisangela Chicaroni Mattos; Cecilia Artico Banho; Lívia Sacchetto; Marília Mazzi Moraes; Rejane Maria Tommasini Grotto; Jayme A Souza-Neto; Maurício Lacerda Nogueira; Heidge Fukumasu; Luiz Lehmann Coutinho; Rodrigo Tocantins Calado; Raul Machado Neto; Ana Maria Bispo de Filippis; Rivaldo Venancio da Cunha; Carla Freitas; Cassio Roberto Leonel Peterka; Cássia de Fátima Rangel Fernandes; Wildo Navegantes; Rodrigo Fabiano do Carmo Said; Carlos F Campelo de A E Melo; Maria Almiron; José Lourenço; Tulio de Oliveira; Edward C Holmes; Ricardo Haddad; Sandra Coccuzzo Sampaio; Maria Carolina Elias; Simone Kashima; Luiz Carlos Junior de Alcantara; Dimas Tadeu Covas
Journal:  Nat Microbiol       Date:  2022-08-18       Impact factor: 30.964

5.  Contrasting Distribution of SARS-CoV-2 Lineages across Multiple Rounds of Pandemic Waves in West Bengal, the Gateway of East and North-East States of India.

Authors:  Animesh K Singh; Rezwanuzzaman Laskar; Anindita Banerjee; Rajiv Kumar Mondal; Bishal Gupta; Sonia Deb; Shreelekha Dutta; Subrata Patra; Trinath Ghosh; Sumanta Sarkar; Shekhar Ghosh; Sabyasachi Bhattacharya; Debojyoti Roy; Ankita Chakraborty; Meghna Chowdhury; Surajit Mahaptra; Antara Paul; Anup Mazumder; Aparna Chowdhury; Shiv Sekhar Chatterjee; Arunabha Sarkar; Raja Ray; Kuhu Pal; Angshuman Jana; Goutam Barik; Swagata Ganguly; Mitali Chatterjee; Dipankar Majhi; Bhaswati Bandopadhyay; Saumitra Das; Arindam Maitra; Nidhan K Biswas
Journal:  Microbiol Spectr       Date:  2022-07-19

6.  Emergence and Spread of a B.1.1.28-Derived P.6 Lineage with Q675H and Q677H Spike Mutations in Uruguay.

Authors:  Natalia Rego; Cecilia Salazar; Mercedes Paz; Alicia Costábile; Alvaro Fajardo; Ignacio Ferrés; Paula Perbolianachis; Tamara Fernández-Calero; Veronica Noya; Matias R Machado; Mariana Brandes; Rodrigo Arce; Mailen Arleo; Tania Possi; Natalia Reyes; María Noel Bentancor; Andrés Lizasoain; Viviana Bortagaray; Ana Moller; Odhille Chappos; Nicolas Nin; Javier Hurtado; Melissa Duquía; Maria Belén González; Luciana Griffero; Mauricio Méndez; Maria Pía Techera; Juan Zanetti; Emiliano Pereira; Bernardina Rivera; Matías Maidana; Martina Alonso; Pablo Smircich; Ighor Arantes; Daiana Mir; Cecilia Alonso; Julio Medina; Henry Albornoz; Rodney Colina; Gonzalo Bello; Pilar Moreno; Gonzalo Moratorio; Gregorio Iraola; Lucía Spangenberg
Journal:  Viruses       Date:  2021-09-10       Impact factor: 5.048
  6 in total

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