| Literature DB >> 34177931 |
Richard Ahn1,2, Damjan Vukcevic3,4,5, Allan Motyer3,4, Joanne Nititham6, David McG Squire3,4, Jill A Hollenbach7, Paul J Norman8, Eva Ellinghaus9, Rajan P Nair10, Lam C Tsoi10,11,12, Jorge Oksenberg7, John Foerster13, Wolfgang Lieb14, Stephan Weidinger15, Andre Franke9, James T Elder10,16, Eric Jorgenson17, Stephen Leslie3,4,18, Wilson Liao6.
Abstract
Killer cell immunoglobulin-like receptors (KIR) regulate immune responses in NK and CD8+ T cells via interaction with HLA ligands. KIR genes, including KIR2DS1, KIR3DL1, and KIR3DS1 have previously been implicated in psoriasis susceptibility. However, these previous studies were constrained to small sample sizes, in part due to the time and expense required for direct genotyping of KIR genes. Here, we implemented KIR*IMP to impute KIR copy number from single-nucleotide polymorphisms (SNPs) on chromosome 19 in the discovery cohort (n=11,912) from the PAGE consortium, University of California San Francisco, and the University of Dundee, and in a replication cohort (n=66,357) from Kaiser Permanente Northern California. Stratified multivariate logistic regression that accounted for patient ancestry and high-risk HLA alleles revealed that KIR2DL2 copy number was significantly associated with psoriasis in the discovery cohort (p ≤ 0.05). The KIR2DL2 copy number association was replicated in the Kaiser Permanente replication cohort. This is the first reported association of KIR2DL2 copy number with psoriasis and highlights the importance of KIR genetics in the pathogenesis of psoriasis.Entities:
Keywords: HLA; KIR; autoimmunity; genetics; imputation; psoriasis
Mesh:
Substances:
Year: 2021 PMID: 34177931 PMCID: PMC8231283 DOI: 10.3389/fimmu.2021.684326
Source DB: PubMed Journal: Front Immunol ISSN: 1664-3224 Impact factor: 8.786
Figure 1Methods flowchart. Flowchart outlining 1) the collection of SNP data from the PAGE consortium and KP as well as the genotyping of SNPs from the UCSF and University of Dundee datasets 2) QC, phasing, and imputation of HLA alleles and KIR CN 3) PCA using ancestry informative SNPs 4) merging of HLA, KIR, and PCA data 5) Association testing in the discovery cohort followed by replication and meta-analysis.
Number of cases and controls from the discovery and replication cohorts.
| Cohort | Cases | Controls |
|---|---|---|
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| UCSF | 747 | 954 |
| University of Dundee | 763 | 676 |
| PAGE-Germany | 2178 | 543 |
| PAGE-Estonia | 856 | 1250 |
| PAGE-North America | 2654 | 1291 |
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| Kaiser Permanente | 2868 | 63489 |
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Figure 2KIR copy number alone is not associated with psoriasis. Plot of ORs estimated from association testing of KIR CN with psoriasis after adjusting for the first 10 PCs.
Known interactions between KIR and HLA ligands.
| KIR | HLA Ligand | Recent Citations |
|---|---|---|
| 2DL1 | HLA-C2 | Winchester et al. ( |
| 2DL2 | HLA-C1 and HLA-C2 | Martin et al. ( |
| 2DS1 | HLA-C2 | Luszczek et al. ( |
| 2DS4 | HLA-C1, HLA-C2 | Hsu et al. ( |
| 3DL1 | HLA-Bw4 | Cella et al. ( |
| 3DS1 | HLA-Bw4-80T | Campbell et al. ( |
Figure 3HLA-C2 and HLA-Bw4 are associated with psoriasis. Plot of ORs estimated from the dominant HLA model adjusted for HLA-C*06:02 and the top 10 PCs.
Figure 4Having two copies of KIR2DL2 is associated with psoriasis in the PAGE+ cohort when stratifying by HLA-C1/C2 after adjustment for HLA-C*06:02 and HLA-C*12:03. Plot of ORs from the KIR2DL2 model adjusted for HLA-C*06:02 and HLA-C*12:03 as well as the top 10 PCs.
Figure 5Having one or two copies of KIR2DL2 is associated with psoriasis in the KP cohort when stratifying by HLA-C1/C2 after adjustment for HLA-C*06:02 and HLA-C*12:03. Plot of ORs from the KIR2DL2 model adjusted for HLA-C*06:02 and HLA-C*12:03 as well as the top 10 PCs.
Figure 6Meta-analysis shows KIR2DL2 is associated with psoriasis. (A) Meta-analysis of model with 2 copies of KIR2DL2, stratified on HLA-C1/C2, and adjusted for HLA-C*0602, HLA-C*12:03, and the first 10 principal components (PCs). (B) Meta-analysis of model with 1 copy of KIR2DL2, stratified on HLA-C1/C2, and adjusted for HLA-C*0602, HLA-C*12:03, and the first 10 PCs.