Literature DB >> 34177310

Homatula guanheensis sp. nov. (Teleostei: Nemacheilidae), a new species of loach from Henan Province, China.

Chuanjiang Zhou1, Wenwen Ma1, Xi Wang1, Yongtao Tang1, Xiaoling Meng1, Guoxing Nie1.   

Abstract

BACKGROUND: The genus Homatula belongs to the order Cypriniformes and family Nemacheilidae. Nichols (1925) set up the genus as a subgenus of Barbatula by the type species of Nemacheilus potanini. Currently, it is recognised as a valid genus. Nineteen valid species have been already reported in the drainage of the Yellow, Yangtze, Pearl, Lancang, Red and Nujiang Rivers. H. variegata, H. longidorsalis, H. berezowskii and H. potanini are distributed in the Yangtze River drainage in China. H. laxiclathra is mainly distributed in the Weihe River, a tributary of the Yellow River. The remaining species are mainly distributed in the rivers of Yunnan Province. NEW INFORMATION: Homatula guanheensis sp. nov., a new species, is described from the Guanhe River of the HanJiang River drainage (a tributary of the Yangtze River), Xixia County, Henan Province, China. It can be distinguished from its congeners by a combination of the following characters: the vertical brown bars on the body are wider than their interspaces, numbering 19-22; predorsal body partially scaled; the lateral line complete; adipose crest on caudal peduncle not reaching forward; the position of the anal-fin origin and the intestinal form. The new species displays distinct molecular divergence in the Cytochrome oxidase I (COI) and Cytochrome b (Cyt b) genes. Chuanjiang Zhou, Wenwen Ma, Xi Wang, Yongtao Tang, Xiaoling Meng, Guoxing Nie.

Entities:  

Keywords:  Homatula ; Hanjiang River drainage; morphology; taxonomy

Year:  2021        PMID: 34177310      PMCID: PMC8222201          DOI: 10.3897/BDJ.9.e65130

Source DB:  PubMed          Journal:  Biodivers Data J        ISSN: 1314-2828


Introduction

The Nemacheilid genus was established by Nichols in 1925 as a subgenus of , based on the type species . Species from are small-size benthic fishes that are distributed in the drainage of the Yellow, Yangtze, Pearl, Lancang, Nujiang and Red Rivers. Some researchers have treated as a synonym of according to its adipose-crest (Chu and Chen 1990, Ding and Deng 1990, Min et al. 2010, Zhou and He 1993, Zhu 1989, Zhu and Cao 1988, Zhu and Wang 1985). However, the type species of was described from western Asia and these had a large geographical gap with the Chinese species (Bǎnǎrescu and Nalbant 1995, Kottelat 1990). Therefore, we accept the opinion of species in western Asia as and all species in China as (Kottelat 1990, Bǎnǎrescu and Nalbant 1995). Nine species of have been reported from China before 2010. (Zhu and Cao, 1988) was treated as a synonym of (Zhu and Wang, 1985) in recent studies by the comparison of phylogenetic analysis and morphological characteristics (Min et al. 2012, Endruweit et al. 2018). In addition, an increasing number of new species of have been reported in recent years: (Min et al. 2013) was the first recorded species of from the Red River; (Yang et al. 2017) and (Endruweit et al. 2018) were also found in the Red River; (Endruweit 2015) was found in the upper Black River Basin; (Min et al. 2012) and (Hu and Zhang 2010) were collected from the Lancang River drainage; (Min et al. 2010) was reported from the Pearl River; (Gu and Zhang 2011) was found in the Wei-He River of the Yellow River drainage in Shaanxi Province and three new species of were identified in the upper Salween River (Li et al. 2019). The morphological variation of in the upper Yellow River drainage, the upper-middle reaches of Yangtze River drainage and the upper Pearl River drainage was investigated by Zeng et al. in 2012. However, the taxonomic status of the specimens from the Hanjiang River of the middle Yangtze River drainage were undetermined (Zeng et al. 2012). The specimens of from the Guanhe River (a tributary of the Han River) were collected during the investigation of fishery resources in Xixia County, Henan Province. Morphological data and DNA taxonomy (COI and Cyt b) were used to identify the samples and the analysis found differences with the species that had been previously discovered. An unnamed species, different from congeners, is described in this paper.

Materials and methods

All specimens were examined and stored in the collection of the College of Fisheries, Henan Normal University, Xinxiang, Henan Province, China. For morphological analysis, 10 specimens were fixed in 10% formalin. All measurements and counts were made following Kottelat (1990). Measurements were made point to point with digital calipers to the nearest 0.1 mm. X-ray films were used to count simple fin rays. Comparative morphometry was examined using PCA in IBM SPSS Statistics 22.0. The PCA analysis was processed using log-transformed morphometric data of percent of Standard Length (SL) in the variance-covariance matrix. To compare molecular characters, eighteen specimens were fixed in 95% ethanol and total genomic DNA was extracted from muscle tissue using standard phenol-chloroform extraction protocols (Sambrook et al. 1989). Two pairs of primers were used to amplify segments of COI and Cyt b by the polymerase chain reaction. The COI primers were designed with reference to other COI gene sequences: Fish-CO I-F (5’-TCT CAA CCA ACC ATA AAG ACA TTGG-3’); Fish-CO I-R (5’-TAT ACT TCT GGG TGC CCA AAG AAT CA-3’). The Cyt b gene primers were designed as GluF (5’-AAC CAC CGT TGT ATT CAA CTA CAA-3’); ThrR (5’-ACC TCC GAT CTT CGG ATT ACA AGA CCG-3’) (Machordom and Doadrio 2001). PCR reactions were carried out in a 30 μl volume and amplifications proceeded for 5 min at 94°C followed by 34 cycles of 95°C for 30 s, 55°C for 30 s, 72°C for 60 s and final extension at 72°C for 10 min. The PCR products were sent to a commercial corporation for sequencing. The nucleotide sequences were assembled from independent sequence passes using the SeqMan (Swindell and Plasterer 1997) module of the DNAStar software package. Additionally, sequences for other species of were obtained from GenBank (Endruweit et al. 2018, Min et al. 2012, Xiong et al. 2017, Yue et al. 2013). Thirteen species of were studied, from which 680-bp COI sequences of 50 samples and 1,120-bp Cyt b sequences of 42 samples were used to identify the new species. A list of taxa with corresponding GenBank accession numbers is presented in Table 1. Phylogenetic analysis was performed using PhyloSuite (Zhang et al. 2020). Multiple alignments were performed with MAFFT version 7 with the default parameters (Katoh and Standley 2013). Then, ModelFinder (Kalyaanamoorthy et al. 2017) was used to ascertain the best-fit model of nucleotide substitution for the sequences using the AIC. Tree analyses were performed under Bayesian Inference (BI). All Bayesian phylogenetic analyses were conducted with MrBayes 3.2 (Ronquist et al. 2012), based on the GTR+F+G4 model estimated by ModelFinder. Four Markov chains were run for 1,000,000 generations to estimate the posterior probability distribution, sampling every 1000 generations. After discarding the first 1000 trees as a burn-in with non-stationary log likelihood values, 50% majority-rule consensus trees were estimated for the remaining trees. Finally, all sequences were grouped according to the results of the phylogenetic analysis. The genetic distances between groups were calculated using MEGA7.0 (Kumar et al. 2016), based on the K2P model.
Table 1.

GenBank accession numbers of COI and Cyt b sequences.

Species COI Gene Accession Numbers Cyt b Gene Accession Numbers
H. longidorsalis MF953196*HM010550*
MF953197*HM010551*
HM010552*
HM010568*
H. anguillioides MF953178*
MF953184*
H. acuticephala HM010526*
HM010505*
HM010527*
HM010528*
H. berezowskii KX394259*
KX394260*
H. coccinocola MF953208*
MF953209*
MF953210*
MF953211*
MF953212*
H. disparizona MF953190*
MF953193*
MF953194*
MF953195*
H. potanini MF953199*JF340396*
MF953200*JF340397*
MF953201*JF340398*
JF340399*
JF340400*
H. pycnolepis MF953202*KF040997*
MF953205*KF040998*
MF953206*KF040999*
MF953207*
H. variegata MF953216*KX394267*
MF953217*KX394268*
MF953218*KX394269*
MF953219*KX394270*
H. wuliangensis MF953220*
MF953221*
MF953222*
H. guanheensis sp. novMT771689-MT771705MT771706-MT1722
Schistura latifasciata MF953223*JN837653*

* Sequences were retrieved from GenBank.

Data resources

All the sequences in this study were retrieved from GenBank and the accession numbers of the newly determined sequences in this study are MT771689-MT771705 (COI) and MT771706-MT1722 (Cyt b).

Taxon treatments

C. J. Zhou, W. W. Ma, Xi Wang, Y.T. Tang, X.L. Meng and G.X. Nie, 2021 sp. n. 48D0735E-DCEA-58E1-BFFD-C6879CB85666 5B17C202-F739-4EB6-BF82-1FF6CDCA25A9 Type status: Holotype. Occurrence: recordNumber: HNU 010048; recordedBy: Henan Provincial Fish Resources Investigation Team; individualCount: 1; sex: female; lifeStage: adult; behavior: cave environment scoured by flowing water; Taxon: scientificName: ; kingdom: ; phylum: ; class: ; order: ; family: ; subgenus: ; Location: waterBody: the Yangtze River; country: China; stateProvince: Henan Province; county: Xixia County; locality: the Guanhe River, a tributary of the Hanjiang River drainage; verbatimElevation: 521 m a.s.l.; verbatimCoordinates: 33°52′79.3″N 111°70'94''E; georeferenceSources: Google Earth; Identification: identifiedBy: Chuan-Jiang Zhou; dateIdentified: 03/21/2017; Event: eventDate: 21/03/2017; Record Level: collectionCode: fish; basisOfRecord: Preserved Specimen Type status: Paratype. Occurrence: recordNumber: HNU 010049-HNU 010056; recordedBy: Henan Provincial Fish Resources Investigation Team; individualCount: 8; lifeStage: adult; behavior: cave environment scoured by flowing water; Taxon: scientificName: ; Location: waterBody: the Yangtze River; country: China; stateProvince: Henan Province; county: Xixia County; locality: the Guanhe River, a tributary of the Hanjiang River drainage; verbatimElevation: 522 m; verbatimCoordinates: 33°52′79.3″N 111°70'95''E; georeferenceSources: Google Earth; Identification: identifiedBy: Chuan-Jiang Zhou; dateIdentified: 03/22/2017; Event: eventDate: 21/03/2017; Record Level: collectionCode: fish; basisOfRecord: Preserved Specimen Type status: Paratype. Occurrence: recordNumber: HNU 010060; recordedBy: Henan Provincial Fish Resources Investigation Team; individualCount: 1; sex: female; lifeStage: adult; behavior: cave environment scoured by flowing water; Taxon: scientificName: ; Location: waterBody: the Yangtze River; country: China; stateProvince: Henan Province; county: Xixia County; locality: the Guanhe River,a tributary of the Hanjiang River drainage; verbatimElevation: 523 m; verbatimCoordinates: 33°52′79.3″N 111°70'96''E; georeferenceSources: Google Earth; Identification: identifiedBy: Chuan-Jiang Zhou; dateIdentified: 23/03/2017; Record Level: collectionCode: fish; basisOfRecord: Preserved Specimen

Description

Body elongate, anterior portion nearly cylindrical and posterior portion compressed; body depth 11.63% (10.41–13.47%) in SL (Table 2). Body scales, back and sides of post-dorsal body closely covered by small scales, predorsal body scales sparse; head, thorax and abdomen scaleless. Lateral line straight, complete and mid-lateral. Vertebrae count 4+41–43. Head short and depressed, naked, wider 56.07% (49.39%–61.12%) in HL than high 45.77% (42.42%–49.95%) in HL. Snout blunt, length 40.75% (34.48%–44.35%) in HL (Table 2). Anterior nostril forms a valve, nostril closer to anterior margin of eye than to snout tip. Eyes oval, closer to snout tip, indiscernible from ventral view. Interorbital width 28.47% (23.89%–31.09%) in HL (Table 2). Mouth inferior, lips thick and furrowed, jaws covered by lips, upper jaw with developed processus dentiformis corresponding with marked median notch on lower jaw. Three pairs of barbels: two rostral barbels, inner pair not reaching mouth corner and outer pair reaching vertical line of anterior nostril; one maxillary barbel extending to the middle and posterior margin of eye (Fig. 1). Dorsal fin ⅲ, 7–81/2 rays, origin nearer to snout tip than to caudal-fin base. Pectoral fin ⅰ, 9–10 rays, not extending beyond halfway from its origin to the pelvic-fin origin. Pelvic fin ⅰ, 6–7 rays, its origins closer to vertical line of first branched rays of dorsal fin; tip of the pelvic fin not extending beyond half the distance from its origin to anal fin origin. Anal fin ⅲ, 51/2 rays; origin of anal fin closer to pelvic fin origin than to caudal fin base, its tip not reaching half distance from anal-fin origin to caudal-fin base. Posterior margin of caudal fin micro-rounded; adipose crests along its dorsal and ventral mid-lines without extending through the origin of anal fin. Intestine formed as a bend, not reaching posterior surface of the U-shaped stomach. Gas bladder osseous, anterior chamber invisible, fully enclosed in a capsule; posterior chamber degenerated.
Table 2.

Trials and morphometric characters of sp. nov.

HolotypeParatypes (n = 9)
rangemeanSD
Standard length (mm)99.676.9-109.2691.8
As%SL
Body depth11.610.4-13.411.90.8
Head length18.517.3-20.318.70.9
Dorsal-fin length 18.5 17.3-21.3 19.3 1.3
Pectoral-fin length12.911.4-14.212.70.9
Pelvic-fin length10.510.3-12.711.40.8
Anal-fin length 13.4 11.6-14.1 13 0.8
Predorsal length46.542.3-49.145.72.3
Pre-anus length18.116.4-20.218.41.3
Prepelvic length47.243.9-49.346.71.2
Pre-anal length72.768.8-73.471.12
Caudal peduncle depth13.610.1-13.611.31.2
Caudal peduncle length20.916.4-23.620.21.8
As%Caudal peduncle length
Caudal peduncle depth 65.1 45.7-76.8 56.6 8.9
As%HL
Head depth43.4 42.4-49.9 45.8 2.6
Head width53.749.3-61.156.13.7
Eye diameter14.612.2-16.914.61.2
Snout length 40.1 34.4-44.3 40.7 3.5
Interorbital width 29.9 23.8-31.1 28.5 2.2
Figure 1.

(holotype, HNU 010048, 99.6 mm SL). A. Lateral view; B. Dorsal view; C. Ventral view; D. Mouth characters; E. Intestine form; F. X–ray (lateral view).

Color in preserved specimens (fixed in 10% formalin)

Head and body brown; a series of 19–22 body bars, each bar at least twice as wide as the interspace. Abdomen yellowish. Dorsal fin with two dark brown marks, one at the base, the other at postmedian of the fin; posterior border of dorsal fin white. Pectoral fins with dark brown spots. Pelvic and anal fins white, dark at the base. Adipose keels white with dark brown spots. Caudal fin dark grey; brown vertical bars on caudal fin base (Fig. 1).

Diagnosis

is different from its congeners in the following characters: partly scaled (vs. in the latter, scales are totally absent or only a few scales on the caudal peduncle in , , and vs. scales all over the body, except for the head in , , , , and ); complete lateral line (vs. incomplete lateral line in and ); the vertical brown bars on the body are wider than their interspaces, numbering 19–22 (vs. equal to interspace or slightly wider than its interspace in , and ); caudal fin micro-rounded (vs. truncated or oblique in and ); adipose crest on caudal peduncle not reaching forward of the position of the anal-fin origin (vs. beyond in vs. identical in ); predorsal body partially scaled (vs. absent scales in and ); anterior nostril forming a valve (vs. forming a spool in ). The vertical brown bars on the body of the new species are similar to . The new species can be further distinguished from in that the intestine forms a bend, not reaching the posterior surface of U-shaped stomach (vs. a loop anteriorly reaching the posterior surface of the U-shaped stomach); anterior with only a few and scattered scales (vs. scaleless).

Etymology

The specific epithet is derived from Guanhe River (鹳河 in Chinese, type locality) with the Latin suffix "-ensis".

Distribution

sp. nov. is known from the Guanhe River of the Hanjiang River drainage (a tributary of the Yangtze River) in Henan Province, Central China (Fig. 3).
Figure 3.

Distribution of all species of in China.

Analysis

Genetic distance and phylogentic trees Based on the COI gene, sequences of 11 studied species were used to construct a BI tree. The new species belonged to a different clade with strong high PP values (100%, Fig. 4), the genetic distance being analysed by the Kimura 2-parameter model. The distance matrix and number of sequences, determined for each species, are shown in Table 4 and Table 5. Genetic distance between and other given species displayed 4.7%–10.6% variation in the COI base pairs (Table 4). The smallest distance, 2.9% (5 vs. 9) was detected between and . Based on the Cyt b gene, the phylogenetic tree analysis showed that is a monophyletic group with a high posterior probability value (100%; Fig. 5). Through the results of the genetic distance analysis, we found that differed from the acquired congeners by 4.2%–10.3%. The genetic distance between and similar species exceeded 2% variation, while the intraspecific variation of was 0% (Table 5).
Figure 4.

The phylogenetic tree of based on the COI gene; was used as the outgroup.

Table 4.

Pairwise comparisons of genetic distance of nine species, based on K2P model from sequences of the COI gene, with number of sequences per species (n), the intraspecific variation, followed by the distance between species (in %).

Speciesnintraspecific variation234567891011
H. guanheensis 170.08.27.75.17.98.74.78.18.37.610.6
H. coccinocola (2)50.08.07.17.09.76.58.96.94.911.9
H. wuliangensis (3)30.06.57.39.86.78.97.56.310.5
H. variegata (4)40.57.28.13.27.46.86.210.5
H. pycnolepis (5)40.07.26.28.42.96.410.0
H. potanini (6)30.97.28.07.48.410.2
H. longidorsalis (7)20.07.16.25.99.6
H. disparizona (8)40.18.38.310.0
H. anguillioides (9)20.06.210.3
H. change (10)50.011.1
S. latifasciata (11)1
Table 5.

Pairwise comparisons of genetic distance of six species, based on K2P model from sequences of the Cyt b gene, the other annotations being the same as Table 4.

Speciesnintraspecific variation
12131415161718
H. guanheensis 170.14.810.39.94.25.89.515.8
H. variegata (12)40.19.89.31.64.99.314.7
H. pycnolepis (13)30.410.39.59.24.015.4
H. potanini (14)50.18.78.79.213.6
H. berezowskii (15)20.24.78.514.5
H. longidorsalis (16)41.58.214.3
H. acuticephala (17)50.014.3
S. latifasciata (18)1
Figure 5.

The phylogenetic tree of based on the Cyt b gene; was used as the outgroup.

Discussion

New species were collected from the Guanhe River of the Hanjiang River drainage (the middle and lower reaches of the Yangtze River). In terms of geographic distribution, the known species in the Yangtze River Basin are as follows: , , and . and are mainly distributed in the upper reaches of the Yangtze River, while is mainly distributed in the Jialingjiang River and the Hanjiang River (Zhu 1989, Yang et al. 1994, Hu and Zhang 2010). Zeng studied the samples of in the Yangtze River and the Yellow River and pointed out that there were differences in interorbital width and caudal peduncle length between specimens of the Hanjiang River and the Jialingjiang River (Zeng et al. 2012). The new species was initially thought to belong to ; however, this hypothesis was quickly abandoned due to the differences in morphology and molecular characters. is distinguished from in having bars at least twice as wide as the interspace (vs. equal to the interspace or slightly wider than its interspace); scales partly on anterior body (vs. scaleless); intestine flat (vs. zigzag); a higher caudal peduncle, depth 11.3% (10.1%–13.6%) in SL [vs. 10.0% (9.1%–10.9%)] (Suppl. material 1). Besides this, they have significant divergence in genetic distance (4.2%, Cyt b). The new species can be distinguished from other species in the Yangtze River Basin by the characteristics of the vertical brown bars, body scale distribution, adipose crest, intestine form and dorsal fin positions. can be clearly distinguished from and from the lateral line (complete vs. incomplete). It is distinct from by having wider bars (vs. narrower), adipose keels not beyond the origin of anal-fin (vs. beyond), head flat, depth 45.8% (42.2%–49.9%) in HL [vs. 49.4% (43.7%–56.8%)] (Suppl. material 1). Besides, the vertical brown bars on the body of the new species are similar to . The first two Principal Components of a processed Principal Component Analysis explained 85% of the variance (Fig. 2Table 3). Meanwhile, the new species can be further distinguished from in having a flat intestine, not reaching posterior surface of the U-shaped stomach (vs. a loop anteriorly and reaching posterior surface); scales partly on anterior body (vs. scaleless); a wider interorbital width 28.5% (23.9%–31.1%) in HL [vs. 22.5% (19.9%–24.9%)]; a higher caudal peduncle, depth 11.3% (10.1%–13.6%) in SL [vs. 9.2% (8.4%–11.4%)] (Suppl. material 1). Similar to , the new species has a slender body with uniform depth, while it differs from by having scales on the predorsal body (vs. scaleless on the predorsal body); anterior nostril forming a valve (vs. forming a spool); vertical brown bars at least twice as wide as interspace (vs. bars wider than interspace on anterior portion, unclear on posterior portion); adipose keels not beyond the origin of anal-fin (vs. identical); a shorter head, length 18.7% (17.3%–20.3%) in SL [vs. 23.2% (21.5%–25.3%)]; pelvic-fin close to tip of snout, prepelvic length 46.7% (43.9%–49.33%) in SL [vs. 52.6% (50.5%–56.7%)] (Suppl. material 1).
Figure 2.

Scatter plots of the first and second principal components from morphometric data of (n = 10, 76.9 –109.26 mm SL) and (n = 23, 67.6–136.7 mm SL).

Table 3.

Component matrix of the Principal Component Analysis from morphometric data of and .

PC1PC2PC3
Body depth0.1560.1260.889
Head length0.8510.2640.229
Head depth0.515-0.0880.46
Head width0.136-0.0740.099
Eye diameter0.807-0.0410.384
Interorbital width0.1370.910.045
Snout length0.7010.1480.036
Dorsal-fin length0.0150.976-0.172
Pectoral-fin length0.780.0940.31
Pelvic-fin length0.6830.5270.196
Anal-fin length0.1820.961-0.078
Predorsal length0.3460.0540.724
Prepelvic length0.292-0.090.753
Prepectoral length0.4810.0950.606
Pre-anal length0.621-0.1610.333
Caudal peduncle length-0.2350.8170.229
Caudal peduncle depth-0.6810.111-0.447
Cumulative variance (%)59.3579.6585.10
According to the results of the phylogenetic tree, , , and the new species gather into a branch, and + ( + ) form a sister group (supported by the Cyt b gene, Fig. 5), but the new species and + form a sister group (supported by the COI gene, Fig. 4). The cause might vary amongst datasets and, thus, this discordance might be influenced by stochastic errors associated with a different number of species and datasets (Naylor and Brown 1998). The results of Cyt b data and the COI data show that the new species has a far genetic distance from , and . Morphometric characters of , , and from Gu and Zhang (2011). morphological Morphometric characters of , , and from Gu and Zhang (2011), comparative materials with Table 2. File: oo_513071.xlsx
1Lateral line incomplete 2
Lateral line complete 3
2Scales present; covering whole body except head and abdomen; dorsal crest high and long, from dorsal-fin base to caudal-fin base (Jinshajiang River, Sichuan Province)H. potanini (Günther, 1896)
Body scaleless or with rudimentary scales; dorsal crest high and short, upper crest not reaching the posterior point of anal-fin base (Wujiang River, Sichuan Province)H. wujiangensis (Ding & Deng, 1990)
3Anterior ending of adipose crest does not reach posterior end of anal-fin base 4
Anterior ending of adipose crest reach posterior end of anal-fin base 7
4The length of dorsal-fin base longer than the longest branched dorsal-fin ray (Nujiang River, Yunnan Province)H. cryptoclathrata (Li et al., 2019)
The length of dorsal-fin base shorter than the longest branched dorsal-fin ray 5
5Having clear pattern of marks on the flank 6
No marks on the flank (Nujiang River, Yunnan Province)H. nigra (Li et al., 2019)
627-34 marks on the flank; dorsal and pelvic fins closer to snout (Nujiang River, Yunnan Province)H. anteridorsalis (Li et al., 2019)
20-22 marks on the flank; dorsal and pelvic fins located intermediate of body (Mengyejiang River, Yunnan Province)H. change (Endruweit, 2015)
7Scales are totally absent or only a few scales on the caudal peduncle 8
Scales clearly present, covering posterior of body at least 11
8No median notch on lower jaw 9
Median notch on lower jaw 10
9The caudal fin emarginate; caudal peduncle narrow and long; vertebrae 4+39~40 (Panlong River, Yunnan Province)H. disparizona (Min et al., 2013)
The caudal fin furcate; caudal peduncle wider and shorter; vertebrae 4+47~48 (the Red River, Yunnan Province)H. wenshanensis (Yang et al., 2017)
10Body with regular vertical bars and bars in front of dorsal fin conspicuously thinner than those behind; no vermiform markings on parietal area or obscure; tip of pelvic fin closing or reaching anus (Nanpanjiang River, Yunnan Province)H. nanpanjiangensis (Min et al., 2010)
Body and head with vermiform markings; dorsal fin and pectoral fin covered by small spots on both sides; tip of pelvic fin quite far away from anus (Yangzonghai River, Yunnan Province)H. oligolepis (Cao & Zhu, 1989)
11Scales covering whole body, except head 12
Posterior part of the body covered by scales; anterior part scaleless or with only a few and scattered scales 16
12Having pelvic axillary lobe 13
Absent pelvic axillary lobeAbsent pelvic axillary lobe 15
13A pair of free protrusions present in pelvic fins (Yangbijiang River, Yunnan Province)H. pycnolepis (Hu & Zhang, 2010)
Absent free protrusions in pelvic fins 14
14Caudal fin slightly emarginated to nearly truncate; having notch on the lower jaw; 16-19 brown bars on a beige background, bars are somewhat straight and never vertically split, notch on the lower jaw (Tengtiaojiang River, Yunnan Province)H. coccinocola (Min et al., 2018)
Caudal fin rounded; lacking notch on the lower jaw; 22-26 brown bars on body (Lancang River, Yunnan Province)H. wuliangensis (Min et al., 2012)
15Caudal fin truncated; body depth extremely decreased posterior of dorsal-fin base; head sharp (Haixihai Lake, Yunnan Province)H. acuticephala (Zhou & He, 1993)
Caudal fin oblique; body depth quite uniform from head to tail; head blunt (Mekong River, Yunnan Province)H. anguillioides (Zhu & Wang, 1985)
16Anterior nostrils pierced in front side of a tube; dorsal fin is far from the snout (Nanpangjiang River, Yunnan Province)H. longidorsalis (Yang et al., 1989)
Anterior nostrils pierced in front side of a flap, dorsal fin closer to the snout 17
17Vertical brown bars narrower or slightly wider than their interspaces 18
Vertical brown bars distinctly wider than interspaces 19
18Caudal fin oblique; intestine forming a single loop; adipose crest of the caudal peduncle anteriorly extending through the anal-fin origin (Jinshajiang River, Weihe River)H. variegata (Sanvage & Dabry, 1874)
Caudal fin truncate; intestine forming a zigzag loop; adipose crest of the caudal peduncle anteriorly not extending through the anal-fin origin (Jialingjiang River, Gansu Province)H. berezowskii (Günther, 1896)
19Caudal fin oblique; intestine with a loop anteriorly reaching the posterior surface of the U-shaped stomach; anterior scaleless (Weihe River, Shaanxi Province)H. laxiclathra (Gu & Zhang, 2012)
Caudal fin micro-rounded; intestine forming a bend; anterior with only a few and scattered scales (Guan River, Henan Province)H. guanheensis sp. nov.
  11 in total

1.  Evidence of a cenozoic Betic-Kabilian connection based on freshwater fish phylogeography (Luciobarbus, Cyprinidae).

Authors:  A Machordom; I Doadrio
Journal:  Mol Phylogenet Evol       Date:  2001-02       Impact factor: 4.286

2.  SEQMAN. Contig assembly.

Authors:  S R Swindell; T N Plasterer
Journal:  Methods Mol Biol       Date:  1997

3.  Loaches of Homatula (Teleostei: Nemacheilidae) from the upper Salween River in Yunnan, China with description of three new species.

Authors:  X U Li; Xing-Jin Che; Wei Zhou
Journal:  Zootaxa       Date:  2019-12-16       Impact factor: 1.091

4.  PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies.

Authors:  Dong Zhang; Fangluan Gao; Ivan Jakovlić; Hong Zou; Jin Zhang; Wen X Li; Gui T Wang
Journal:  Mol Ecol Resour       Date:  2019-11-06       Impact factor: 7.090

5.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

6.  [Age structure and genetic diversity of Homatula pycnolepis in the Nujiang River basin].

Authors:  Xing-Jian Yue; Shao-Ping Liu; Ming-Dian Liu; Xin-Bin Duan; Deng-Qiang Wang; Da-Qing Chen
Journal:  Dongwuxue Yanjiu       Date:  2013-08

7.  A new species of Homatula from the Red River drainage in Yunnan based on morphological and genetic data (Teleostei: Nemacheilidae).

Authors:  Marco Endruweit; Rui Min; Junxing Yang
Journal:  Zootaxa       Date:  2018-01-25       Impact factor: 1.091

8.  Amphioxus mitochondrial DNA, chordate phylogeny, and the limits of inference based on comparisons of sequences.

Authors:  G J Naylor; W M Brown
Journal:  Syst Biol       Date:  1998-03       Impact factor: 15.683

9.  MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Authors:  Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck
Journal:  Syst Biol       Date:  2012-02-22       Impact factor: 15.683

10.  ModelFinder: fast model selection for accurate phylogenetic estimates.

Authors:  Subha Kalyaanamoorthy; Bui Quang Minh; Thomas K F Wong; Arndt von Haeseler; Lars S Jermiin
Journal:  Nat Methods       Date:  2017-05-08       Impact factor: 28.547

View more
  1 in total

1.  A new species of Homatula (Teleostei, Cobitoidea, Nemacheilidae) from the Pearl River drainage, Yunnan, China.

Authors:  Rui Min; Yahui Zhao; Jingsong Shi; Junxing Yang
Journal:  Zookeys       Date:  2022-03-17       Impact factor: 1.546

  1 in total

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