Literature DB >> 34172582

Ion-dependent protein-surface interactions from intrinsic solvent response.

Jesse L Prelesnik1, Robert G Alberstein2, Shuai Zhang3,4, Harley Pyles5,6, David Baker5,6,7, Jim Pfaendtner1,8, James J De Yoreo3,4, F Akif Tezcan9,10, Richard C Remsing11, Christopher J Mundy12,13.   

Abstract

The phyllosilicate mineral muscovite mica is widely used as a surface template for the patterning of macromolecules, yet a molecular understanding of its surface chemistry under varying solution conditions, required to predict and control the self-assembly of adsorbed species, is lacking. We utilize all-atom molecular dynamics simulations in conjunction with an electrostatic analysis based in local molecular field theory that affords a clean separation of long-range and short-range electrostatics. Using water polarization response as a measure of the electric fields that arise from patterned, surface-bound ions that direct the adsorption of charged macromolecules, we apply a Landau theory of forces induced by asymmetrically polarized surfaces to compute protein-surface interactions for two muscovite-binding proteins (DHR10-mica6 and C98RhuA). Comparison of the pressure between surface and protein in high-concentration KCl and NaCl aqueous solutions reveals ion-specific differences in far-field protein-surface interactions, neatly capturing the ability of ions to modulate the surface charge of muscovite that in turn selectively attracts one binding face of each protein over all others.

Entities:  

Keywords:  Landau theory; electrostatics; soft matter; solution assembly; specific ion effects

Mesh:

Substances:

Year:  2021        PMID: 34172582      PMCID: PMC8255788          DOI: 10.1073/pnas.2025121118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

1.  Heteroepitaxial streptavidin nanocrystals reveal critical role of proton "fingers" and subsurface atoms in determining adsorbed protein orientation.

Authors:  Daniel M Czajkowsky; Lin Li; Jielin Sun; Jun Hu; Zhifeng Shao
Journal:  ACS Nano       Date:  2011-12-21       Impact factor: 15.881

2.  Local molecular field theory for effective attractions between like charged objects in systems with strong Coulomb interactions.

Authors:  Yng-Gwei Chen; John D Weeks
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-02       Impact factor: 11.205

3.  Epitaxially guided assembly of collagen layers on mica surfaces.

Authors:  Wee Wen Leow; Wonmuk Hwang
Journal:  Langmuir       Date:  2011-07-29       Impact factor: 3.882

4.  Long-ranged contributions to solvation free energies from theory and short-ranged models.

Authors:  Richard C Remsing; Shule Liu; John D Weeks
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-29       Impact factor: 11.205

Review 5.  Protein Assembly: Versatile Approaches to Construct Highly Ordered Nanostructures.

Authors:  Quan Luo; Chunxi Hou; Yushi Bai; Ruibing Wang; Junqiu Liu
Journal:  Chem Rev       Date:  2016-09-02       Impact factor: 60.622

6.  Identification of Single Adsorbed Cations on Mica-Liquid Interfaces by 3D Force Microscopy.

Authors:  Daniel Martin-Jimenez; Ricardo Garcia
Journal:  J Phys Chem Lett       Date:  2017-11-09       Impact factor: 6.475

Review 7.  Metal-directed protein self-assembly.

Authors:  Eric N Salgado; Robert J Radford; F Akif Tezcan
Journal:  Acc Chem Res       Date:  2010-05-18       Impact factor: 22.384

8.  Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations.

Authors:  In Suk Joung; Thomas E Cheatham
Journal:  J Phys Chem B       Date:  2008-07-02       Impact factor: 2.991

9.  Thermodynamics at Solid-Liquid Interfaces.

Authors:  Michael Frank; Dimitris Drikakis
Journal:  Entropy (Basel)       Date:  2018-05-12       Impact factor: 2.524

Review 10.  NEURODEGENERATION. Alzheimer's and Parkinson's diseases: The prion concept in relation to assembled Aβ, tau, and α-synuclein.

Authors:  Michel Goedert
Journal:  Science       Date:  2015-08-07       Impact factor: 47.728

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  2 in total

1.  A deterministic code for transcription factor-DNA recognition through computation of binding interfaces.

Authors:  Marco Trerotola; Laura Antolini; Laura Beni; Emanuela Guerra; Mariano Spadaccini; Damiano Verzulli; Antonino Moschella; Saverio Alberti
Journal:  NAR Genom Bioinform       Date:  2022-03-04

2.  Self-consistent determination of long-range electrostatics in neural network potentials.

Authors:  Ang Gao; Richard C Remsing
Journal:  Nat Commun       Date:  2022-03-23       Impact factor: 14.919

  2 in total

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