| Literature DB >> 34171231 |
Peter Bager1, Jan Wohlfahrt2, Jannik Fonager3, Morten Rasmussen3, Mads Albertsen4, Thomas Yssing Michaelsen4, Camilla Holten Møller5, Steen Ethelberg6, Rebecca Legarth6, Mia Sarah Fischer Button6, Sophie Gubbels5, Marianne Voldstedlund5, Kåre Mølbak7, Robert Leo Skov5, Anders Fomsgaard3, Tyra Grove Krause5.
Abstract
BACKGROUND: The more infectious SARS-CoV-2 lineage B.1.1.7 rapidly spread in Europe after December, 2020, and a concern that B.1.1.7 could cause more severe disease has been raised. Taking advantage of Denmark's high RT-PCR testing and whole genome sequencing capacities, we used national health register data to assess the risk of COVID-19 hospitalisation in individuals infected with B.1.1.7 compared with those with other SARS-CoV-2 lineages.Entities:
Year: 2021 PMID: 34171231 PMCID: PMC8219488 DOI: 10.1016/S1473-3099(21)00290-5
Source DB: PubMed Journal: Lancet Infect Dis ISSN: 1473-3099 Impact factor: 25.071
Characteristics of the study population according to SARS-CoV-2 lineage and COVID-19 hospitalisations
| Other lineages (n=20 028) | B.1.1.7 (n=10 544) | p value | All (n=1944) | Other lineages (n=1373) | B.1.1.7 (n=571) | p value | |||
|---|---|---|---|---|---|---|---|---|---|
| Sex | .. | .. | <0·0001 | .. | .. | .. | 0·29 | ||
| Female | 10 513 (52·5%) | 5092 (48·3%) | .. | 942 (48·5%) | 676 (49·2%) | 266 (46·6%) | .. | ||
| Male | 9515 (47·5%) | 5452 (51·7%) | .. | 1002 (51·5%) | 697 (50·8%) | 305 (53·4%) | .. | ||
| Age, years | .. | .. | <0·0001 | .. | .. | .. | <0·0001 | ||
| 0–29 | 6924 (34·6%) | 4679 (44·4%) | .. | 129 (6·6%) | 69 (5·0%) | 60 (10·5%) | .. | ||
| 30–59 | 8515 (42·5%) | 4670 (44·3%) | .. | 592 (30·5%) | 347 (25·3%) | 245 (42·9%) | .. | ||
| ≥60 | 4589 (22·9%) | 1195 (11·3%) | .. | 1223 (62·9%) | 957 (69·7%) | 266 (46·6%) | .. | ||
| Period | .. | .. | <0·0001 | .. | .. | .. | 0·0012 | ||
| Week 53 | 2340 (11·7%) | 40 (0·4%) | .. | 173 (8·9%) | 171 (12·5%) | 2 (0·4%) | .. | ||
| Week 01 | 3924 (19·6%) | 143 (1·4%) | .. | 345 (17·7%) | 330 (24·0%) | 15 (2·6%) | .. | ||
| Week 02 | 3859 (19·3%) | 296 (2·8%) | .. | 281 (14·5%) | 253 (18·4%) | 28 (4·9%) | .. | ||
| Week 03 | 3181 (15·9%) | 466 (4·4%) | .. | 253 (13·0%) | 226 (16·5%) | 27 (4·7%) | .. | ||
| Week 04 | 2129 (10·6%) | 515 (4·9%) | .. | 152 (7·8%) | 122 (8·9%) | 30 (5·3%) | .. | ||
| Week 05 | 1568 (7·8%) | 661 (6·3%) | .. | 150 (7·7%) | 110 (8·0%) | 40 (7·0%) | .. | ||
| Week 06 | 1032 (5·2%) | 921 (8·7%) | .. | 121 (6·2%) | 57 (4·2%) | 64 (11·2%) | .. | ||
| Week 07 | 825 (4·1%) | 1583 (15·0%) | .. | 126 (6·5%) | 40 (2·9%) | 86 (15·1%) | .. | ||
| Week 08 | 636 (3·2%) | 2039 (19·3%) | .. | 146 (7·5%) | 32 (2·3%) | 114 (20·0%) | .. | ||
| Week 09 | 396 (2·0%) | 2270 (21·5%) | .. | 128 (6·6%) | 24 (1·7%) | 104 (18·2%) | .. | ||
| Week 10 | 138 (0·7%) | 1610 (15·3%) | .. | 69 (3·5%) | 8 (0·6%) | 61 (10·7%) | .. | ||
| Region | .. | .. | <0·0001 | .. | .. | .. | <0·0001 | ||
| Capital | 8663 (43·3%) | 4591 (43·5%) | .. | 821 (42·2%) | 581 (42·3%) | 240 (42·0%) | .. | ||
| Central Denmark | 3094 (15·4%) | 1296 (12·3%) | .. | 282 (14·5%) | 220 (16·0%) | 62 (10·9%) | .. | ||
| North Denmark | 1843 (9·2%) | 284 (2·7%) | .. | 144 (7·4%) | 129 (9·4%) | 15 (2·6%) | .. | ||
| Zealand | 3238 (16·2%) | 1554 (14·7%) | .. | 349 (18·0%) | 244 (17·8%) | 105 (18·4%) | .. | ||
| Southern Denmark | 3028 (15·1%) | 2715 (25·7%) | .. | 337 (17·3%) | 192 (14·0%) | 145 (25·4%) | .. | ||
| Missing name of region | 162 (0·8%) | 104 (1·0%) | .. | 11 (0·6%) | 7 (0·5%) | 4 (0·7%) | .. | ||
| Number of comorbidities | .. | .. | <0·0001 | .. | .. | .. | <0·0001 | ||
| 0 | 14 678 (73·3%) | 8380 (79·5%) | .. | 758 (39·0%) | 461 (33·6%) | 297 (52·0%) | .. | ||
| ≥1 | 5350 (26·7%) | 2164 (20·5%) | .. | 1186 (61·0%) | 912 (66·4%) | 274 (48·0%) | .. | ||
| Test track | .. | .. | <0·0001 | .. | .. | .. | <0·0001 | ||
| Health-care track | 4863 (24·3%) | 974 (9·2%) | .. | 1106 (56·9%) | 932 (67·9%) | 174 (30·5%) | .. | ||
| Community track | 15 165 (75·7%) | 9570 (90·8%) | .. | 838 (43·1%) | 441 (32·1%) | 397 (69·5%) | .. | ||
| Ct values in community track | .. | .. | 0·94 | .. | .. | .. | 0·47 | ||
| Ct value registered | 14 819 (97·7%) | 8990 (93·9%) | .. | 794 (94·7%) | 426 (96·6%) | 368 (92·7%) | .. | ||
| Ct <30 | 10 360 (69·9%) | 6281 (69·9%) | .. | 575 (72·4%) | 304 (71·4%) | 271 (73·6%) | .. | ||
| Ct ≥30 | 4459 (30·1%) | 2709 (30·1%) | .. | 219 (27·6%) | 122 (28·6%) | 97 (26·4%) | .. | ||
Data are n (%), unless otherwise specified. Ct=cycle threshold.
ptrend value.
266 (0·9%) individuals had no sampling region name registered in the COVID-19 surveillance database.
Ct values in the health-care track were not available for data analysis.
Proportion of community-track cases (however, Ct values were missing for samples from 926 (3·7%) of 24 735 individuals in this track).
Infection with lineage B.1.1.7 and risk of hospitalisation overall and by sex, age, period, region, number of comorbidities, test track, and Ct value
| Yes (n=1944) | No (n=28 628) | Crude | p value | Adjusted | p value | ||
|---|---|---|---|---|---|---|---|
| Overall Infection with SARS-CoV-2 lineage B.1.1.7 | .. | .. | .. | <0·0001 | .. | <0·0001 | |
| No (other co-existing lineages) | 1373 (6·9%) | 18 655 (93·1%) | 1 (ref) | .. | 1 (ref) | .. | |
| Yes (lineage B.1.1.7) | 571 (5·4%) | 9973 (94·6%) | 0·79 (0·72–0·87) | .. | 1·42 (1·25–1·60) | .. | |
| B.1.1.7 infection by sex | .. | .. | .. | 0·52 | .. | 0·87 | |
| Male | 305 (5·6%) | 5147 (94·4%) | 0·76 (0·67–0·87) | .. | 1·41 (1·21–1·63) | .. | |
| Female | 266 (5·2%) | 4826 (94·8%) | 0·81 (0·71–0·93) | .. | 1·43 (1·22–1·67) | .. | |
| B.1.1.7 infection by age, years | .. | .. | .. | 0·67 | .. | 0·90 | |
| 0–29 | 60 (1·3%) | 4619 (98·7%) | 1·32 (0·93–1·86) | .. | 1·42 (0·99–2·04) | .. | |
| 30–59 | 245 (5·2%) | 4425 (94·8%) | 1·35 (1·15–1·58) | .. | 1·46 (1·22–1·74) | .. | |
| ≥60 | 266 (22·3%) | 929 (77·7%) | 1·23 (1·10–1·39) | .. | 1·39 (1·21–1·60) | .. | |
| B.1.1.7 infection by period | .. | .. | .. | 0·35 | .. | 0·48 | |
| Jan 1–16 | 42 (9·7%) | 393 (90·3%) | 1·32 (0·98–1·78) | .. | 1·49 (1·13–1·98) | .. | |
| Jan 17 to Feb 2 | 78 (6·4%) | 1144 (93·6%) | 0·98 (0·78–1·24) | .. | 1·63 (1·30–2·04) | .. | |
| Feb 3–19 | 146 (5·9%) | 2316 (94·1%) | 1·04 (0·84–1·30) | .. | 1·33 (1·08–1·63) | .. | |
| Feb 20 to March 9 | 305 (4·7%) | 6120 (95·3%) | 0·91 (0·70–1·17) | .. | 1·28 (1·01–1·64) | .. | |
| B.1.1.7 infection by region | .. | .. | .. | 0·69 | .. | 0·75 | |
| Capital | 240 (5·2%) | 4351 (94·8%) | 0·78 (0·67–0·90) | .. | 1·50 (1·27–1·77) | .. | |
| Central Denmark | 62 (4·8%) | 1234 (95·2%) | 0·67 (0·51–0·89) | .. | 1·32 (1·00–1·74) | .. | |
| North Denmark | 15 (5·3%) | 269 (94·7%) | 0·75 (0·45–1·27) | .. | 1·29 (0·77–2·14) | .. | |
| Zealand | 105 (6·8%) | 1449 (93·2%) | 0·90 (0·72–1·12) | .. | 1·29 (1·04–1·59) | .. | |
| Southern Denmark | 145 (5·3%) | 2570 (94·7%) | 0·84 (0·68–1·04) | .. | 1·53 (1·24–1·89) | .. | |
| Missing name of region | 4 (3·8%) | 100 (96·2%) | 0·89 (0·27–2·97) | .. | 1·13 (0·35–3·65) | .. | |
| B.1.1.7 infection by number of comorbidities | .. | .. | .. | <0·0001 | .. | 0·086 | |
| 0 | 297 (3·5%) | 8083 (96·5%) | 1·13 (0·98–1·30) | .. | 1·56 (1·33–1·84) | .. | |
| ≥1 | 274 (12·7%) | 1890 (87·3%) | 0·74 (0·66–0·84) | .. | 1·33 (1·15–1·54) | .. | |
| B.1.1.7 infection by test track | .. | .. | .. | <0·0001 | .. | 0·33 | |
| Health-care track | 174 (17·9%) | 800 (82·1%) | 0·93 (0·81–1·08) | .. | 1·53 (1·31–1·77) | .. | |
| Community track | 397 (4·1%) | 9173 (95·9%) | 1·43 (1·25–1·63) | .. | 1·67 (1·43–1·95) | .. | |
| B.1.1.7 infection by Ct value | .. | .. | .. | 0·45 | .. | 0·37 | |
| Ct <30 | 271 (4·3%) | 6010 (95·7%) | 1·47 (1·25–1·73) | .. | 1·83 (1·49–2·25) | .. | |
| Ct ≥30 | 97 (3·6%) | 2612 (96·4%) | 1·31 (1·01–1·70) | .. | 1·59 (1·20–2·12) | .. | |
Data are n (%) or RR (95% CI). p values in the stratified analysis are tests for interaction terms. Adjusted RRs were adjusted for the basic (a priori) covariates sex, age (10-year groups), sample period (calendar week), region (five groups), and comorbidities in the preceding 5 years (none or one or more). RRs in the stratified analysis were adjusted for the remaining basic covariates. However, in strata by age (three age-groups), RR were also adjusted for age in 10-year groups, and in strata by period (four periods), RRs were also adjusted for period in calendar weeks. Ct=cycle threshold. RR=risk ratio.
Percentages are of the total number of individuals with B.1.1.7 infection in each respective category (table 1); to shorten the table, the stratified analyses do not show the number of individuals for the reference group of non-B.1.1.7 infection (table 1).
Percentages are of 20 028 individuals infected with lineages other than B.1.1.7.
Ct values were available for the community track alone; in the community track, Ct values were missing for samples from 926 (3·7%) of 24 735 individuals.
Adjusting for age alone (in 5-year age-groups) increased the RR to 1·55 (95% CI 1·36–1·76) in the health-care track and 1·75 (1·53–1·99) in the community track.
Infection with lineage B.1.1.7 and risk of hospitalisation in additional stratified analysis of the study population
| Main analysis | 571 | 1·42 (1·25–1·60) | .. | ||
| Stratification | |||||
| Living in a long-term care facility | .. | .. | 0·65 | ||
| No | 561 | 1·41 (1·24–1·59) | .. | ||
| Yes, previously | 5 | 1·94 (1·00–3·74) | .. | ||
| Yes, currently | 5 | 1·22 (0·53–2·78) | .. | ||
| Health-care worker | .. | .. | 0·011 | ||
| No | 551 | 1·37 (1·21–1·55) | .. | ||
| Yes | 20 | 3·29 (1·90–5·69) | .. | ||
| Vaccinated against SARS-CoV-2 | .. | .. | 0·53 | ||
| No | 513 | 1·42 (1·24–1·62) | .. | ||
| Yes, tested positive before vaccination | 19 | 1·14 (0·76–1·70) | .. | ||
| Yes, tested positive after first vaccination | 31 | 1·66 (1·20–2·31) | .. | ||
| Yes, tested positive after second vaccination | 8 | 1·35 (0·63–2·89) | .. | ||
Data are n or RR (95% CI). RRs adjusted for sex, age (10-year groups), sample period (calendar week), region (five groups), and number of comorbidities in the preceding 5 years (none or one or more). RR=risk ratio.
See table 2.
Vaccinations until March 24, 2021, included the vaccines BNT162b2 (Pfizer–BioNTech [Mainz, Germany], introduced Dec 27, 2020), mRNA-1273 (Moderna [Cambridge, MA, USA], introduced Jan 14, 2021), and ChAdOx1 (AstraZeneca [Cambridge, UK], introduced Feb 8, 2021, and paused or stopped on March 11 to date); the percentage of individuals vaccinated at ages 0–29 years was 3·2%, at 30–59 years was 12·0%, and at 60 years or older was 32·2%.