| Literature DB >> 34170979 |
Md Nurul Ahad Tawhid1, Siuly Siuly1, Hua Wang1, Frank Whittaker2, Kate Wang3, Yanchun Zhang1.
Abstract
Autism spectrum disorder (ASD) is a developmental disability characterized by persistent impairments in social interaction, speech and nonverbal communication, and restricted or repetitive behaviors. Currently Electroencephalography (EEG) is the most popular tool to inspect the existence of neurological disorders like autism biomarkers due to its low setup cost, high temporal resolution and wide availability. Generally, EEG recordings produce vast amount of data with dynamic behavior, which are visually analyzed by professional clinician to detect autism. It is laborious, expensive, subjective, error prone and has reliability issue. Therefor this study intends to develop an efficient diagnostic framework based on time-frequency spectrogram images of EEG signals to automatically identify ASD. In the proposed system, primarily, the raw EEG signals are pre-processed using re-referencing, filtering and normalization. Then, Short-Time Fourier Transform is used to transform the pre-processed signals into two-dimensional spectrogram images. Afterward those images are evaluated by machine learning (ML) and deep learning (DL) models, separately. In the ML process, textural features are extracted, and significant features are selected using principal component analysis, and feed them to six different ML classifiers for classification. In the DL process, three different convolutional neural network models are tested. The proposed DL based model achieves higher accuracy (99.15%) compared to the ML based model (95.25%) on an ASD EEG dataset and also outperforms existing methods. The findings of this study suggest that the DL based structure could discover important biomarkers for efficient and automatic diagnosis of ASD from EEG and may assist to develop computer-aided diagnosis system.Entities:
Year: 2021 PMID: 34170979 PMCID: PMC8232415 DOI: 10.1371/journal.pone.0253094
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Overview of the proposed framework.
Fig 2CNN model 1.
Fig 3CNN model 2.
Fig 4CNN model 3.
Fig 5Electrodes placement of autism data acquisition system by [39].
Fig 6Sample spectrogram images.
(a) Images from ASD group, (b) Images from non ASD subjects.
Overall performance for different ML classifiers.
| Classifier | Sensitivity % | Specificity % | F1 score | AUC | Accuracy % |
|---|---|---|---|---|---|
| NB | 66.83 | 84.67 | 0.78 | 0.77 | 72.09 |
| LDA | 91.54 | 86.26 | 0.93 | 0.96 | 89.97 |
| RF | 70.02 | 0.94 | 0.97 | 90.59 | |
| 90.67 | 0.94 | 92.29 | |||
| LR | 96.99 | 90.06 | 0.96 | 94.95 | |
| SVM | 97.07 | 90.95 |
Fig 7Fold wise sensitivity.
Fig 8Fold wise specificity.
Fig 9Fold wise accuracy.
Fig 10ROC graph for different ML based classifiers.
Fig 11Fold wise AUC value.
Overall performance for different CNN models.
| Classifier | Sensitivity % | Specificity % | F1 score | AUC | Accuracy % |
|---|---|---|---|---|---|
| Model 1 | 98.80 | 89.76 | 0.97 | 0.94 | 96.16 |
| Model 2 | 98.81 | 88.94 | 0.97 | 0.94 | 96.02 |
| Model 3 (B:32) | 97.71 | 0.99 | 0.98 | 98.15 | |
| Model 3 (B:128) | 96.57 | 0.99 | 0.98 | 98.72 | |
| Model 3 (B:256) | 99.39 | 98.12 | 0.99 | 99.00 | |
| Model 3 (B:64) | 99.19 | 99.04 |
Fig 12ROC graph of CNN model 3 with batch size 64.
Fig 13Training and validation loss Vs accuracy graph of CNN model 3 with batch size 64.
Comparison with proposed and existing methods using same dataset.
| Authors | Feature extraction | Classifier | Accuracy % |
|---|---|---|---|
| Alsaggaf | FFT | FLDA | 80.27 |
| Alhaddad | FFT | FLDA | 90.00 |
| Kamel | FFT | RFLD | 92.06 |
| Nur | MLPN | MLPN | 80.00 |
| Djemal | DWT, SE | ANN | 98.60 |
| Alturki | DWT, SE | ANN | 98.20 |
| Spectrogram image | CNN |
Comparison with proposed and existing methods using different datasets.
| Authors | Dataset | Feature extraction | Classifier | Accuracy % |
|---|---|---|---|---|
| Sheikhani | Own dataset | STFT | 82.40 | |
| Ahmadlou | Iranian dataset | Wavelet and fractal dimension | RBNN | 90.00 |
| Bosl | Own dataset | mMSE | SVM | 90.00 |
| Ahmadlou | Iranian dataset | Wavelet and visibility graph | EPNN | 95.50 |
| Sheikhani | Own dataset | STFT and statistical | 96.40 | |
| Ahmadlou | Iranian dataset | Wavelet and fuzzy logic | EPNN | 95.50 |
| Eldridge | Own dataset | SSD, mMSE | SVM, LR, NB | 79.00 |
| Grossi | Own dataset | MSROM/I-FAST | Sn, LR, SMO, | 92.80 |
| Heunis | Own dataset | RQA, PCA | SVM | 92.90 |
| Haputhanthri | Own dataset | DWT and statistical | LR, SVM, NB, RF | 93.00 |
| Jayarathna | Own dataset | statistical and entropy | RF, LR, JRip, CNN etc. | 98.06 |
| Haputhanthri | Own dataset | statistical and entropy | LR, MLP, NB, RF | 88.00 |
| Abdolzadegan | Own dataset | Linear and nonlinear | 90.57 | |